{"title":"从尼日利亚几内亚湾附近的三个水体中提取 CARANX senegallus 的 DNA 条形码","authors":"O. J. Eriegha, J. Ekelemu, O. F. Nwachi","doi":"10.33003/fjs-2024-0801-2242","DOIUrl":null,"url":null,"abstract":"Fish species show astonishing phenotypic and genetic diversity in populations. The delimitation and recognition of fish species are not only of interest to taxonomists but also a requirement in studies of ecology. In this study, the genetic structure of Caranx senegallus collected from three water bodies adjoining the Gulf of Guinea, Nigeria was characterized using the cytochrome c oxidase I (COI) barcode gene region. Fish samples collected from Qua Iboe estuary, Escravos estuary, and Lagos lagoon were identified morphologically, and muscle tissues were used for DNA barcoding using Fish1 and Fish2 primers. Evolutionary analysis showed the formation of diverging clades in the neighbor-joining tree and indicated the presence of multiple species. The result also revealed that morphological identification was not entirely successful, as the Basic Local Alignment Search Tool (BLAST) prediction confirmed the presence of three specimens initially identified as C. senegallus but genetically matching C. fischeri and Trachinotus goreensis. This observation further emphasized the need for an integrative method for species identification.","PeriodicalId":282447,"journal":{"name":"FUDMA JOURNAL OF SCIENCES","volume":"23 10","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-03-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"DNA BARCODING OF Caranx senegallus FROM THREE WATER BODIES ADJOINING THE GULF OF GUINEA, NIGERIA\",\"authors\":\"O. J. Eriegha, J. Ekelemu, O. F. Nwachi\",\"doi\":\"10.33003/fjs-2024-0801-2242\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Fish species show astonishing phenotypic and genetic diversity in populations. The delimitation and recognition of fish species are not only of interest to taxonomists but also a requirement in studies of ecology. In this study, the genetic structure of Caranx senegallus collected from three water bodies adjoining the Gulf of Guinea, Nigeria was characterized using the cytochrome c oxidase I (COI) barcode gene region. Fish samples collected from Qua Iboe estuary, Escravos estuary, and Lagos lagoon were identified morphologically, and muscle tissues were used for DNA barcoding using Fish1 and Fish2 primers. Evolutionary analysis showed the formation of diverging clades in the neighbor-joining tree and indicated the presence of multiple species. The result also revealed that morphological identification was not entirely successful, as the Basic Local Alignment Search Tool (BLAST) prediction confirmed the presence of three specimens initially identified as C. senegallus but genetically matching C. fischeri and Trachinotus goreensis. This observation further emphasized the need for an integrative method for species identification.\",\"PeriodicalId\":282447,\"journal\":{\"name\":\"FUDMA JOURNAL OF SCIENCES\",\"volume\":\"23 10\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-03-07\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"FUDMA JOURNAL OF SCIENCES\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.33003/fjs-2024-0801-2242\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"FUDMA JOURNAL OF SCIENCES","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.33003/fjs-2024-0801-2242","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
鱼类物种在种群中表现出惊人的表型和遗传多样性。鱼类物种的划分和识别不仅是分类学家感兴趣的问题,也是生态学研究的需要。本研究利用细胞色素 c 氧化酶 I(COI)条形码基因区域,对从毗邻尼日利亚几内亚湾的三个水体中采集的 Caranx senegallus 的遗传结构进行了表征。对从 Qua Iboe 河口、Escravos 河口和拉各斯泻湖采集的鱼类样本进行了形态鉴定,并使用 Fish1 和 Fish2 引物对肌肉组织进行了 DNA 条形码鉴定。进化分析表明,在邻接树中形成了分化支系,并表明存在多个物种。结果还显示,形态学鉴定并不完全成功,因为基本局部比对搜索工具(BLAST)预测证实,有三个标本最初被鉴定为 C. senegallus,但在基因上与 C. fischeri 和 Trachinotus goreensis 匹配。这一观察结果进一步强调了采用综合方法进行物种鉴定的必要性。
DNA BARCODING OF Caranx senegallus FROM THREE WATER BODIES ADJOINING THE GULF OF GUINEA, NIGERIA
Fish species show astonishing phenotypic and genetic diversity in populations. The delimitation and recognition of fish species are not only of interest to taxonomists but also a requirement in studies of ecology. In this study, the genetic structure of Caranx senegallus collected from three water bodies adjoining the Gulf of Guinea, Nigeria was characterized using the cytochrome c oxidase I (COI) barcode gene region. Fish samples collected from Qua Iboe estuary, Escravos estuary, and Lagos lagoon were identified morphologically, and muscle tissues were used for DNA barcoding using Fish1 and Fish2 primers. Evolutionary analysis showed the formation of diverging clades in the neighbor-joining tree and indicated the presence of multiple species. The result also revealed that morphological identification was not entirely successful, as the Basic Local Alignment Search Tool (BLAST) prediction confirmed the presence of three specimens initially identified as C. senegallus but genetically matching C. fischeri and Trachinotus goreensis. This observation further emphasized the need for an integrative method for species identification.