通过特征融合和遗传算法识别精神分裂症的重要基因特征。

IF 2.7 4区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Mammalian Genome Pub Date : 2024-06-01 Epub Date: 2024-03-21 DOI:10.1007/s00335-024-10034-7
Zhixiong Chen, Ruiquan Ge, Changmiao Wang, Ahmed Elazab, Xianjun Fu, Wenwen Min, Feiwei Qin, Gangyong Jia, Xiaopeng Fan
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引用次数: 0

摘要

精神分裂症是一种使人衰弱的精神疾病,会严重影响患者的生活质量,并导致永久性脑损伤。虽然医学研究已经发现了某些遗传风险因素,但该疾病的具体发病机制仍不清楚。尽管采用磁共振成像技术的研究十分普遍,但很少有研究关注基因水平和基因表达谱,其中涉及大量筛选出的基因。然而,基因数据的高维度给精确建模带来了巨大挑战。为了应对当前的挑战,本研究提出了一种利用启发式特征融合和多目标优化遗传算法的新型特征选择策略。其目标是提高分类性能,并确定精神分裂症诊断的关键基因子集。传统的基因筛选技术不足以准确确定与精神分裂症相关的关键基因的数量。我们的创新方法整合了基于滤波器的特征选择方法和多目标优化遗传算法,前者用于降低数据维度,后者用于改进分类任务。通过将过滤和包装方法结合起来,我们的策略有意识地利用了它们各自的优势,从而提高了分类的准确性,并更有效地选择了相关基因。这种方法在 14 个相关数据集中的 11 个数据集上的分类结果都有显著改善。其余三个数据集的表现与现有方法相当。此外,直观分析和富集分析也证实了我们提出的方法的实用性,它是一种很有前途的精神分裂症早期检测工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of important gene signatures in schizophrenia through feature fusion and genetic algorithm.

Schizophrenia is a debilitating psychiatric disorder that can significantly affect a patient's quality of life and lead to permanent brain damage. Although medical research has identified certain genetic risk factors, the specific pathogenesis of the disorder remains unclear. Despite the prevalence of research employing magnetic resonance imaging, few studies have focused on the gene level and gene expression profile involving a large number of screened genes. However, the high dimensionality of genetic data presents a great challenge to accurately modeling the data. To tackle the current challenges, this study presents a novel feature selection strategy that utilizes heuristic feature fusion and a multi-objective optimization genetic algorithm. The goal is to improve classification performance and identify the key gene subset for schizophrenia diagnostics. Traditional gene screening techniques are inadequate for accurately determining the precise number of key genes associated with schizophrenia. Our innovative approach integrates a filter-based feature selection method to reduce data dimensionality and a multi-objective optimization genetic algorithm for improved classification tasks. By combining the filtering and wrapper methods, our strategy leverages their respective strengths in a deliberate manner, leading to superior classification accuracy and a more efficient selection of relevant genes. This approach has demonstrated significant improvements in classification results across 11 out of 14 relevant datasets. The performance on the remaining three datasets is comparable to the existing methods. Furthermore, visual and enrichment analyses have confirmed the practicality of our proposed method as a promising tool for the early detection of schizophrenia.

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来源期刊
Mammalian Genome
Mammalian Genome 生物-生化与分子生物学
CiteScore
4.00
自引率
0.00%
发文量
33
审稿时长
6-12 weeks
期刊介绍: Mammalian Genome focuses on the experimental, theoretical and technical aspects of genetics, genomics, epigenetics and systems biology in mouse, human and other mammalian species, with an emphasis on the relationship between genotype and phenotype, elucidation of biological and disease pathways as well as experimental aspects of interventions, therapeutics, and precision medicine. The journal aims to publish high quality original papers that present novel findings in all areas of mammalian genetic research as well as review articles on areas of topical interest. The journal will also feature commentaries and editorials to inform readers of breakthrough discoveries as well as issues of research standards, policies and ethics.
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