{"title":"从Ajuga integrifolia Buch.-Ham.中鉴定潜在抗高血压化合物的分子对接方法(In silico Molecular Docking Approach to Identify Potential Antihypertensive Compounds from Ajuga integrifolia Buch.-Ham.Ex D.Don (Armagusa).","authors":"Fekade Beshah Tessema, Yilma Hunde Gonfa, Tilahun Belayneh Asfaw, Mesfin Getachew Tadesse, Rakesh Kumar Bachheti","doi":"10.2147/AABC.S392878","DOIUrl":null,"url":null,"abstract":"<p><strong>Background: </strong><i>Ajuga integrifolia</i> (Armagusa) is used as a decoction to treat high blood pressure and diabetes, widely in Ethiopia. Specific compounds for anti-hypertension activity were not identified so far. This study aims to provide a scientific basis for the therapeutic use of <i>A. integrifolia</i> as an antihypertension agent.</p><p><strong>Methods: </strong>In silico studies were used to evaluate the antihypertensive components of <i>A. integrifolia</i>. Flavonoids identified using HPLC analysis and iridoid glycosides isolated from <i>A. integrifolia</i> in this study and those isolated from synonyms (<i>A. remota</i> and <i>A. bractosa</i>) were considered in the molecular docking study. Interactions were studied by using Autodock vina (1.2) on PyRx 0.8 and visualizing in 2D and 3D using ligPlot+ and Discovery studio software. Activities like vasoprotection and druglikeness properties were predicted using online servers.</p><p><strong>Results: </strong>Flavonoids such as quercetin, myricetin, and rutin were identified and quantified by HPLC analysis from different extracts of <i>A. integrifolia</i>. Reptoside and 8-O-acetylharpgide isolated from the aerial part of <i>A. integrifolia</i>. The binding energies of all 17 candidates considered in this study range from -10.2 kcal/mol to -7.5 kcal/mol and are lower than enalapril (reference drug: -5.9 kcal/mol). The binding energies, in most case, constitute hydrogen bonding. Biological activity predicted using PASS test also showed that the flavonoids have more probability of activity than the iridoid glycosides. Druglikeness properties of the candidate molecules showed that most follow the Lipinski rule of five with few violations.</p><p><strong>Conclusion: </strong>Lower binding energies involving hydrogen bonding and predicted activities concerning hypertension confirm the traditional use of the aerial part of the medicinal plant concerned. Flavonoids: rutin, myricetin, quercetin, and kaempferol take the leading role in the antihypertensive activity of the aerial part of <i>A. integrifolia</i>. The iridoid glycosides studied are almost similar in their effect on their antihypertensive activity and still better than the reference drug.</p>","PeriodicalId":53584,"journal":{"name":"Advances and Applications in Bioinformatics and Chemistry","volume":"17 ","pages":"47-59"},"PeriodicalIF":0.0000,"publicationDate":"2024-03-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10942012/pdf/","citationCount":"0","resultStr":"{\"title\":\"In silico Molecular Docking Approach to Identify Potential Antihypertensive Compounds from <i>Ajuga integrifolia</i> Buch.-Ham. Ex D. Don (Armagusa).\",\"authors\":\"Fekade Beshah Tessema, Yilma Hunde Gonfa, Tilahun Belayneh Asfaw, Mesfin Getachew Tadesse, Rakesh Kumar Bachheti\",\"doi\":\"10.2147/AABC.S392878\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong><i>Ajuga integrifolia</i> (Armagusa) is used as a decoction to treat high blood pressure and diabetes, widely in Ethiopia. Specific compounds for anti-hypertension activity were not identified so far. This study aims to provide a scientific basis for the therapeutic use of <i>A. integrifolia</i> as an antihypertension agent.</p><p><strong>Methods: </strong>In silico studies were used to evaluate the antihypertensive components of <i>A. integrifolia</i>. Flavonoids identified using HPLC analysis and iridoid glycosides isolated from <i>A. integrifolia</i> in this study and those isolated from synonyms (<i>A. remota</i> and <i>A. bractosa</i>) were considered in the molecular docking study. Interactions were studied by using Autodock vina (1.2) on PyRx 0.8 and visualizing in 2D and 3D using ligPlot+ and Discovery studio software. Activities like vasoprotection and druglikeness properties were predicted using online servers.</p><p><strong>Results: </strong>Flavonoids such as quercetin, myricetin, and rutin were identified and quantified by HPLC analysis from different extracts of <i>A. integrifolia</i>. Reptoside and 8-O-acetylharpgide isolated from the aerial part of <i>A. integrifolia</i>. The binding energies of all 17 candidates considered in this study range from -10.2 kcal/mol to -7.5 kcal/mol and are lower than enalapril (reference drug: -5.9 kcal/mol). The binding energies, in most case, constitute hydrogen bonding. Biological activity predicted using PASS test also showed that the flavonoids have more probability of activity than the iridoid glycosides. Druglikeness properties of the candidate molecules showed that most follow the Lipinski rule of five with few violations.</p><p><strong>Conclusion: </strong>Lower binding energies involving hydrogen bonding and predicted activities concerning hypertension confirm the traditional use of the aerial part of the medicinal plant concerned. Flavonoids: rutin, myricetin, quercetin, and kaempferol take the leading role in the antihypertensive activity of the aerial part of <i>A. integrifolia</i>. The iridoid glycosides studied are almost similar in their effect on their antihypertensive activity and still better than the reference drug.</p>\",\"PeriodicalId\":53584,\"journal\":{\"name\":\"Advances and Applications in Bioinformatics and Chemistry\",\"volume\":\"17 \",\"pages\":\"47-59\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-03-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10942012/pdf/\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Advances and Applications in Bioinformatics and Chemistry\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.2147/AABC.S392878\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/1/1 0:00:00\",\"PubModel\":\"eCollection\",\"JCR\":\"Q2\",\"JCRName\":\"Biochemistry, Genetics and Molecular Biology\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Advances and Applications in Bioinformatics and Chemistry","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.2147/AABC.S392878","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/1/1 0:00:00","PubModel":"eCollection","JCR":"Q2","JCRName":"Biochemistry, Genetics and Molecular Biology","Score":null,"Total":0}
引用次数: 0
摘要
背景:Ajuga integrifolia(Armagusa)在埃塞俄比亚被广泛用作治疗高血压和糖尿病的煎剂。迄今为止,尚未发现具有抗高血压活性的特定化合物。本研究旨在为将 A. integrifolia 用作抗高血压药提供科学依据:方法:采用硅学研究评估 A. integrifolia 的抗高血压成分。在分子对接研究中,考虑了利用高效液相色谱分析鉴定的黄酮类化合物和本研究中从集成叶中分离的铱苷类化合物,以及从同义词(A. remota 和 A. bractosa)中分离的铱苷类化合物。在 PyRx 0.8 上使用 Autodock vina (1.2) 对相互作用进行了研究,并使用 ligPlot+ 和 Discovery studio 软件进行了二维和三维可视化。结果:结果:通过高效液相色谱分析,鉴定并定量了A. integrifolia不同提取物中的黄酮类化合物,如槲皮素、杨梅素和芦丁。从整叶木贼的气生部分分离出了雷公藤苷和 8-O-乙酰哈巴苷。本研究中考虑的所有 17 种候选化合物的结合能在 -10.2 kcal/mol 至 -7.5 kcal/mol 之间,低于依那普利(参考药物:-5.9 kcal/mol)。在大多数情况下,这些结合能构成氢键。利用 PASS 测试预测的生物活性也表明,黄酮类化合物比鸢尾苷类化合物具有更高的活性概率。候选分子的药物亲和性特性表明,大多数候选分子遵循利平斯基五项法则,只有少数候选分子违反了这一法则:结论:较低的氢键结合能和预测的高血压活性证实了相关药用植物气生部分的传统用途。黄酮类化合物:芦丁、杨梅素、槲皮素和山柰酚在 A. integrifolia 气生部分的抗高血压活性中起主导作用。所研究的鸢尾甙在降压活性方面的效果几乎相似,但仍优于参考药物。
In silico Molecular Docking Approach to Identify Potential Antihypertensive Compounds from Ajuga integrifolia Buch.-Ham. Ex D. Don (Armagusa).
Background: Ajuga integrifolia (Armagusa) is used as a decoction to treat high blood pressure and diabetes, widely in Ethiopia. Specific compounds for anti-hypertension activity were not identified so far. This study aims to provide a scientific basis for the therapeutic use of A. integrifolia as an antihypertension agent.
Methods: In silico studies were used to evaluate the antihypertensive components of A. integrifolia. Flavonoids identified using HPLC analysis and iridoid glycosides isolated from A. integrifolia in this study and those isolated from synonyms (A. remota and A. bractosa) were considered in the molecular docking study. Interactions were studied by using Autodock vina (1.2) on PyRx 0.8 and visualizing in 2D and 3D using ligPlot+ and Discovery studio software. Activities like vasoprotection and druglikeness properties were predicted using online servers.
Results: Flavonoids such as quercetin, myricetin, and rutin were identified and quantified by HPLC analysis from different extracts of A. integrifolia. Reptoside and 8-O-acetylharpgide isolated from the aerial part of A. integrifolia. The binding energies of all 17 candidates considered in this study range from -10.2 kcal/mol to -7.5 kcal/mol and are lower than enalapril (reference drug: -5.9 kcal/mol). The binding energies, in most case, constitute hydrogen bonding. Biological activity predicted using PASS test also showed that the flavonoids have more probability of activity than the iridoid glycosides. Druglikeness properties of the candidate molecules showed that most follow the Lipinski rule of five with few violations.
Conclusion: Lower binding energies involving hydrogen bonding and predicted activities concerning hypertension confirm the traditional use of the aerial part of the medicinal plant concerned. Flavonoids: rutin, myricetin, quercetin, and kaempferol take the leading role in the antihypertensive activity of the aerial part of A. integrifolia. The iridoid glycosides studied are almost similar in their effect on their antihypertensive activity and still better than the reference drug.