Samuel Schmidgall, Ji Woong Kim, Jeffery Jopling, Axel Krieger
{"title":"普外科视觉转换器:用于普外科手术的视频预训练基础模型","authors":"Samuel Schmidgall, Ji Woong Kim, Jeffery Jopling, Axel Krieger","doi":"arxiv-2403.05949","DOIUrl":null,"url":null,"abstract":"The absence of openly accessible data and specialized foundation models is a\nmajor barrier for computational research in surgery. Toward this, (i) we\nopen-source the largest dataset of general surgery videos to-date, consisting\nof 680 hours of surgical videos, including data from robotic and laparoscopic\ntechniques across 28 procedures; (ii) we propose a technique for video\npre-training a general surgery vision transformer (GSViT) on surgical videos\nbased on forward video prediction that can run in real-time for surgical\napplications, toward which we open-source the code and weights of GSViT; (iii)\nwe also release code and weights for procedure-specific fine-tuned versions of\nGSViT across 10 procedures; (iv) we demonstrate the performance of GSViT on the\nCholec80 phase annotation task, displaying improved performance over\nstate-of-the-art single frame predictors.","PeriodicalId":501572,"journal":{"name":"arXiv - QuanBio - Tissues and Organs","volume":"41 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-03-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"General surgery vision transformer: A video pre-trained foundation model for general surgery\",\"authors\":\"Samuel Schmidgall, Ji Woong Kim, Jeffery Jopling, Axel Krieger\",\"doi\":\"arxiv-2403.05949\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"The absence of openly accessible data and specialized foundation models is a\\nmajor barrier for computational research in surgery. Toward this, (i) we\\nopen-source the largest dataset of general surgery videos to-date, consisting\\nof 680 hours of surgical videos, including data from robotic and laparoscopic\\ntechniques across 28 procedures; (ii) we propose a technique for video\\npre-training a general surgery vision transformer (GSViT) on surgical videos\\nbased on forward video prediction that can run in real-time for surgical\\napplications, toward which we open-source the code and weights of GSViT; (iii)\\nwe also release code and weights for procedure-specific fine-tuned versions of\\nGSViT across 10 procedures; (iv) we demonstrate the performance of GSViT on the\\nCholec80 phase annotation task, displaying improved performance over\\nstate-of-the-art single frame predictors.\",\"PeriodicalId\":501572,\"journal\":{\"name\":\"arXiv - QuanBio - Tissues and Organs\",\"volume\":\"41 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-03-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Tissues and Organs\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2403.05949\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Tissues and Organs","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2403.05949","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
General surgery vision transformer: A video pre-trained foundation model for general surgery
The absence of openly accessible data and specialized foundation models is a
major barrier for computational research in surgery. Toward this, (i) we
open-source the largest dataset of general surgery videos to-date, consisting
of 680 hours of surgical videos, including data from robotic and laparoscopic
techniques across 28 procedures; (ii) we propose a technique for video
pre-training a general surgery vision transformer (GSViT) on surgical videos
based on forward video prediction that can run in real-time for surgical
applications, toward which we open-source the code and weights of GSViT; (iii)
we also release code and weights for procedure-specific fine-tuned versions of
GSViT across 10 procedures; (iv) we demonstrate the performance of GSViT on the
Cholec80 phase annotation task, displaying improved performance over
state-of-the-art single frame predictors.