Fish age reading using deep learning methods for object-detection and segmentation

Determination of individual age is one essential step in the accurate assessment of fish stocks. In non-tropical environments, the manual count of ring-like growth patterns in fish otoliths (ear stones) is the standard method. It relies on visual means and individual judgment and thus is subject to bias and interpretation errors. The use of automated pattern recognition based on machine learning may help to overcome this problem. Here, we employ two deep learning methods based on Convolutional Neural Networks (CNNs). The first approach utilizes the Mask R-CNN algorithm to perform object detection on the major otolith reading axes. The second approach employs the U-Net architecture to perform semantic segmentation on the otolith image in order to segregate the regions of interest. For both methods, we applied a simple postprocessing to count the rings on the output masks returned, which corresponds to the age prediction. Multiple benchmark tests indicate the promising performance of our implemented approaches, comparable to recently published methods based on classical image processing and traditional CNN implementation. Furthermore, our algorithms showed higher robustness compared to the existing methods, while also having the capacity to extrapolate missing age groups and to adapt to a new domain or data source.