Shagufta Parveen, Saman Shehzadi, Nusrat Shafiq, Maryam Rashid, Sadaf Naz, Tahir Mehmood, Rabia Riaz, Khalid S Almaary, Hiba-Allah Nafidi, Mohammed Bourhia
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引用次数: 0
摘要
黄酮类化合物对人类健康有益,因为黄酮类化合物具有重要的生物特性。山奈酚是一种黄酮醇,存在于可食用植物和通常用于古代药物的植物(油辣木、椴树属、蕨属和银杏等)中。一些医学研究表明,使用富含山奈酚的食物可以降低许多疾病(癌症、血管疾病)的风险。我们从 PubChem 数据库中收集了 50 种山奈酚衍生物的所有数据。通过 Schrödinger 软件,利用场基方法对 50 种化合物进行了 3D-QSAR 研究。山奈酚衍生物的构象与抗糖尿病、抗微生物共晶体结构和蛋白质进行了对接。为了监测最佳的抗糖尿病和抗菌剂,从 PubChem 数据库中下载了特定的山奈酚衍生物。通过分子对接进行虚拟筛选,得到了四种与四种不同蛋白质结合的先导化合物。研究发现,这些命中化合物是糖尿病酶α-淀粉酶和 DPP IV 的强效抑制剂,并具有抑制 DNA 回旋酶和二氢叶酸还原酶合成的潜力。通过 iMOD 服务器对对接复合物进行分子动力学模拟,评估了均方根波动值。山奈酚 3-O-alpha-L-(2,3-di-Z-p-香豆酰)鼠李糖苷(42)化合物用于抗糖尿病,山奈酚 3-O-龙胆二糖苷(3)用于抗菌,效果良好,可用于药物研发。
A discovery of potent kaempferol derivatives as multi-target medicines against diabetes as well as bacterial infections: an in silico approach.
Flavonoids demonstrate beneficial effects on human health because flavonoids contain important biological properties. Kaempferol is a flavonol, type of flavonoid found in eatable plants and in plants usually employed in ancient drugs (Moringa oleifera, Tilia spp., fern genus spp. and gingko etc.). Some medicinal studies have shown that the use of foods full of kaempferol decreases the risk of many (cancer, vascular) diseases. All the data of 50 kaempferol derivatives were collected from PubChem database. Through Schrödinger software, 3D-QSAR study was performed for 50 compounds by using method of field base. Conformer of kaempferol derivatives was docked against anti-diabetic, anti-microbial co-crystal structures and protein. To monitor the best anti-diabetic and antibacterial agent, particular kaempferol derivatives were downloaded from PubChem database. Virtual screening by molecular docking provided four lead compounds with four different proteins. These hit compounds were found to be potent inhibitor for diabetic enzymes alpha-amylase and DPP IV and had the potential to suppress DNA gyrase and dihydrofolate reductase synthesis. Molecular dynamic simulation of docked complexes evaluates the value of root mean square fluctuation by iMOD server. Kaempferol 3-O-alpha-L-(2, 3-di-Z-p-coumaroyl) rhamnoside (42) compound used as anti-diabetic and kaempferol 3-O-gentiobioside (3) as antibacterial with good results can be used for drug discovery.
期刊介绍:
The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.