Anjali Priya, Mohammed Dashti, Thangavel Alphonse Thanaraj, Mohammad Irshad, Virendra Singh, Ravi Tandon, Rekha Mehrotra, Alok Kumar Singh, Payal Mago, Vishal Singh, Md Zubbair Malik, Ashwini Kumar Ray
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引用次数: 0
摘要
肺癌对全球健康构成严重威胁,尤其是在印度等地区,5 年生存率仍然低得惊人。我们的研究旨在发现有效治疗和早期检测的关键标志物。我们利用 BioXpress 数据库确定了与肺癌相关的特定基因,并通过 DAVID 富集分析深入研究了这些基因的作用。通过运用网络理论,我们探索了肺癌网络中错综复杂的相互作用,发现 ASPM 和 MKI67 是关键的调控基因。对 microRNA 和转录因子相互作用的预测为我们提供了更多启示。利用 GEPIA 和 KM Plotter 对基因表达模式的研究揭示了这些关键基因的临床意义。在我们寻求靶向疗法的过程中,药物库指出甲氨蝶呤是一种治疗已确定的关键调节基因的潜在药物。为证实这一点,我们通过 Swiss Dock 进行了分子对接研究,结果表明它们之间存在良好的结合相互作用。为确保稳定性,我们使用 AMBER 16 套件进行了分子动力学模拟。总之,我们的研究将 ASPM 和 MKI67 定义为肺癌网络中的重要调控因子。对枢纽基因和功能通路的鉴定增强了我们对分子过程的理解,并提供了潜在的治疗靶点。重要的是,在强大的对接和模拟研究的支持下,甲氨蝶呤成为一种有前景的候选药物。这些发现为进一步的实验验证奠定了坚实的基础,并有望推进肺癌的个性化治疗策略。
Identification of potential regulatory mechanisms and therapeutic targets for lung cancer.
Lung cancer poses a significant health threat globally, especially in regions like India, with 5-year survival rates remain alarmingly low. Our study aimed to uncover key markers for effective treatment and early detection. We identified specific genes related to lung cancer using the BioXpress database and delved into their roles through DAVID enrichment analysis. By employing network theory, we explored the intricate interactions within lung cancer networks, identifying ASPM and MKI67 as crucial regulator genes. Predictions of microRNA and transcription factor interactions provided additional insights. Examining gene expression patterns using GEPIA and KM Plotter revealed the clinical relevance of these key genes. In our pursuit of targeted therapies, Drug Bank pointed to methotrexate as a potential drug for the identified key regulator genes. Confirming this, molecular docking studies through Swiss Dock showed promising binding interactions. To ensure stability, we conducted molecular dynamics simulations using the AMBER 16 suite. In summary, our study pinpoints ASPM and MKI67 as vital regulators in lung cancer networks. The identification of hub genes and functional pathways enhances our understanding of molecular processes, offering potential therapeutic targets. Importantly, methotrexate emerged as a promising drug candidate, supported by robust docking and simulation studies. These findings lay a solid foundation for further experimental validations and hold promise for advancing personalized therapeutic strategies in lung cancer.
期刊介绍:
The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.