Sonia Kaushik, Rashmi Rameshwari, Shilpa S Chapadgaonkar
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引用次数: 0
摘要
胆碱氧化酶作为一种黄蛋白,可促进胆碱向甘氨酸甜菜碱的转化。值得注意的是,胆碱氧化酶及其产物甘氨酸甜菜碱在各个行业和研究领域都有广泛的应用。然而,胆碱氧化酶的高敏感性和在高温下失去功能活性的倾向降低了其工业用途。MD 模拟和突变研究揭示了导致该酶热不稳定性的某些残基的作用。本研究的重点是通过计算方法诱导球形虫胆碱氧化酶在最高温度 60 °C 下的热稳定性。MD 模拟分析表明,Trp 331、Val 464 和 Ser 101 造成了结构的不稳定性,导致了 60 °C 时的不稳定性。用苯丙氨酸残基突变这些残基,并在 60 ℃ 下模拟突变后的酶,结果显示其具有耐热性,且残余波动不明显。重新对接和 MM/GBSA 分析进一步验证了突变酶的结合亲和力和催化活性。
Enzyme engineering of choline oxidase for improving stability.
Functioning as a flavoprotein, choline oxidase facilitates the transformation of choline into glycine betaine. Notably, choline oxidase and its resultant product, glycine betaine, find extensive applications across various industries and fields of study. However, its high sensitivity and tendency to lose functional activity at high temperatures reduces its industrial usage. MD simulation and mutation studies have revealed the role of certain residues responsible for the enzyme's thermal instability. This study focuses on inducing thermal stability to choline oxidase of A. globiformis through computational approaches at a maximum temperature of 60 °C. MD simulation analysis showed that Trp 331, Val 464 and Ser 101 contribute to structural instability, leading to the instability at 60 °C. Mutation of these residues with phenylalanine residues and simulation of the mutated enzyme at 60 °C exhibited thermostability and insignificant residual fluctuation. The re-docking and MM/GBSA analyses further validated the mutated enzyme's binding affinity and catalytic activity.
期刊介绍:
The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.