解码 Era 蛋白在结核分枝杆菌 H37Rv 存活过程中的结构完整性和多功能作用。

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Preeti Agarwal, Ajit Kumar, Laxman S Meena
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引用次数: 0

摘要

Era是一种广为人知的GTP结合蛋白,存在于包括原核生物和真核生物在内的许多生物体中,在细胞生长、分化和信号传导等许多基本细胞过程中发挥着重要作用。在结核分枝杆菌(Mtb)H37Rv中,Era蛋白已被证实是一种GTP酶蛋白,但其结构和功能仍缺乏深入研究。通过比较分析、结构建模、对接和使用各种生物信息学工具,对 Era 蛋白进行了详细研究,以推断其结构、功能和参与蛋白活性的残基。有趣的是,对接结果显示 Era 不仅与 GTP 有很高的结合亲和力,而且与 ATP 也有很高的结合亲和力。据预测,Era 上的肉豆蔻酰化修饰和磷酸化可能有助于调节 Era 的活性和定位;通过显示 Era 与 16s rRNA 的关联,还可以预见 Era 在翻译调节中的作用。此外,通过对 Era 残基进行点突变,发现 W288G 和 K19G 会严重破坏蛋白质结构和活性的稳定性。此外,还将 Era 蛋白与 25 种 GTPase/ATPase 抑制剂进行了对接,其中,Dynasore 抑制剂与该蛋白的 GTP 结合位点的亲和力最高,可用于进一步的药物试验,以抑制分枝杆菌的生长。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Decoding the structural integrity and multifunctional role of Era protein in the survival of Mycobacterium tuberculosis H37Rv.

Era, a widely known GTP binding protein found in many organisms including prokaryotes and eukaryotes and plays a significant role in many fundamental cellular processes like cell growth, differentiation and signaling. In Mycobacterium tuberculosis (Mtb) H37Rv, Era protein had been proved as a GTPase protein but its structural and functional insights are still lacking. Through comparative analysis, structural modeling, docking and using various bioinformatic tools, a detailed investigation of Era was carried out to deduce the structure, function and residues involved in the activity of the protein. Intriguingly, docking results revealed high binding affinity of Era not only with GTP but also with ATP. Myristoylation modifications and phosphorylations on Era were predicted to possibly aid in regulating Era activity and localization; and also the role of Era in translation regulation was foreseen by showing its association with 16s rRNA. Moreover, point mutation of Era residues revealed the effect of W288G and K19G in highly destabilizing the protein structure and activity. Additionally, Era protein was docked with 25 GTPase/ATPase inhibitors, where, Dynasore inhibitor showed the highest affinity for the protein's GTP binding sites and can be used for further drug trials to inhibit growth of mycobacteria.

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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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