{"title":"4-甲基苯氧乙酸、4-乙酰基苯氧乙酸和 4-叔丁基苯氧乙酸的量子化学评价、ELF、LOL 分析、Fukui、除草剂相似性和分子对接研究 - 对比研究","authors":"Karpagavalli K, Daisy Magdaline J, Chithambarathanu T, Vijaya P, Amjesh R","doi":"10.1007/s11224-023-02271-4","DOIUrl":null,"url":null,"abstract":"<div><p>The phenoxyacetic acid and its derivatives have attracted considerable attention as they have proven to be excellent bioactive herbicides. The optimized molecular geometry and the fundamental vibrational frequencies of 4-methyl-phenoxyacetic acid (4MPA), 4-acetyl-phenoxyacetic acid (4APA) and 4-tert-butyl-phenoxyacetic acid (4TBPA) have computed using density functional theory (DFT) method with 6–311++G(d,p) basis set. The theoretically predicted wavenumbers are found to be in close agreement with the experimentally determined one. The band gap energy of HOMO and LUMO depicts the charge transfer interactions occurring within the molecules. Global reactivity descriptors have utilized to assess the chemical reactivity. It has been observed that 4APA exhibits good electrophilic properties with a higher electrophilicity index (ω = 2.993 eV) compared to other compounds such as 4TBPA and 4MPA. The molecular electrostatic potential surface (MESP) has been plotted over the optimized structure to estimate the reactive sites of electrophilic and nucleophilic attacks on the phenoxyacetic acid molecule. Fukui function is also used to analyze their electrophilic and nucleophilic descriptors with Hirshfeld charges. Electron localization function (ELF) and local orbital localizer (LOL) are discussed using the multifunction wavefunction (Multiwfn) analyzer. Using the HerbiPAD tool, the herbicide-likeness parameter has exposed the good herbicide-like behaviour of the title compounds. Additionally, the Tice rule and pK<sub>a</sub> are described, providing valuable insights into the herbicidal activity of phenoxyacetic acid compounds. The 4APA compound is highly effective, which exhibits more herbicidal activity when interacting with the auxin receptor TIR1. It demonstrates a strong binding affinity of -8.56 kcal/mol.</p></div>","PeriodicalId":780,"journal":{"name":"Structural Chemistry","volume":"35 4","pages":"1307 - 1333"},"PeriodicalIF":2.1000,"publicationDate":"2024-02-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Quantum chemical evaluation, ELF, LOL analysis, Fukui, herbicide-likeness and molecular docking studies of 4-methyl-phenoxyacetic acid, 4-acetyl-phenoxyacetic acid and 4-tert-butyl-phenoxyacetic acid – a comparative study\",\"authors\":\"Karpagavalli K, Daisy Magdaline J, Chithambarathanu T, Vijaya P, Amjesh R\",\"doi\":\"10.1007/s11224-023-02271-4\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><p>The phenoxyacetic acid and its derivatives have attracted considerable attention as they have proven to be excellent bioactive herbicides. The optimized molecular geometry and the fundamental vibrational frequencies of 4-methyl-phenoxyacetic acid (4MPA), 4-acetyl-phenoxyacetic acid (4APA) and 4-tert-butyl-phenoxyacetic acid (4TBPA) have computed using density functional theory (DFT) method with 6–311++G(d,p) basis set. The theoretically predicted wavenumbers are found to be in close agreement with the experimentally determined one. The band gap energy of HOMO and LUMO depicts the charge transfer interactions occurring within the molecules. Global reactivity descriptors have utilized to assess the chemical reactivity. It has been observed that 4APA exhibits good electrophilic properties with a higher electrophilicity index (ω = 2.993 eV) compared to other compounds such as 4TBPA and 4MPA. The molecular electrostatic potential surface (MESP) has been plotted over the optimized structure to estimate the reactive sites of electrophilic and nucleophilic attacks on the phenoxyacetic acid molecule. Fukui function is also used to analyze their electrophilic and nucleophilic descriptors with Hirshfeld charges. Electron localization function (ELF) and local orbital localizer (LOL) are discussed using the multifunction wavefunction (Multiwfn) analyzer. Using the HerbiPAD tool, the herbicide-likeness parameter has exposed the good herbicide-like behaviour of the title compounds. Additionally, the Tice rule and pK<sub>a</sub> are described, providing valuable insights into the herbicidal activity of phenoxyacetic acid compounds. The 4APA compound is highly effective, which exhibits more herbicidal activity when interacting with the auxin receptor TIR1. It demonstrates a strong binding affinity of -8.56 kcal/mol.</p></div>\",\"PeriodicalId\":780,\"journal\":{\"name\":\"Structural Chemistry\",\"volume\":\"35 4\",\"pages\":\"1307 - 1333\"},\"PeriodicalIF\":2.1000,\"publicationDate\":\"2024-02-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Structural Chemistry\",\"FirstCategoryId\":\"92\",\"ListUrlMain\":\"https://link.springer.com/article/10.1007/s11224-023-02271-4\",\"RegionNum\":4,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Structural Chemistry","FirstCategoryId":"92","ListUrlMain":"https://link.springer.com/article/10.1007/s11224-023-02271-4","RegionNum":4,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
Quantum chemical evaluation, ELF, LOL analysis, Fukui, herbicide-likeness and molecular docking studies of 4-methyl-phenoxyacetic acid, 4-acetyl-phenoxyacetic acid and 4-tert-butyl-phenoxyacetic acid – a comparative study
The phenoxyacetic acid and its derivatives have attracted considerable attention as they have proven to be excellent bioactive herbicides. The optimized molecular geometry and the fundamental vibrational frequencies of 4-methyl-phenoxyacetic acid (4MPA), 4-acetyl-phenoxyacetic acid (4APA) and 4-tert-butyl-phenoxyacetic acid (4TBPA) have computed using density functional theory (DFT) method with 6–311++G(d,p) basis set. The theoretically predicted wavenumbers are found to be in close agreement with the experimentally determined one. The band gap energy of HOMO and LUMO depicts the charge transfer interactions occurring within the molecules. Global reactivity descriptors have utilized to assess the chemical reactivity. It has been observed that 4APA exhibits good electrophilic properties with a higher electrophilicity index (ω = 2.993 eV) compared to other compounds such as 4TBPA and 4MPA. The molecular electrostatic potential surface (MESP) has been plotted over the optimized structure to estimate the reactive sites of electrophilic and nucleophilic attacks on the phenoxyacetic acid molecule. Fukui function is also used to analyze their electrophilic and nucleophilic descriptors with Hirshfeld charges. Electron localization function (ELF) and local orbital localizer (LOL) are discussed using the multifunction wavefunction (Multiwfn) analyzer. Using the HerbiPAD tool, the herbicide-likeness parameter has exposed the good herbicide-like behaviour of the title compounds. Additionally, the Tice rule and pKa are described, providing valuable insights into the herbicidal activity of phenoxyacetic acid compounds. The 4APA compound is highly effective, which exhibits more herbicidal activity when interacting with the auxin receptor TIR1. It demonstrates a strong binding affinity of -8.56 kcal/mol.
期刊介绍:
Structural Chemistry is an international forum for the publication of peer-reviewed original research papers that cover the condensed and gaseous states of matter and involve numerous techniques for the determination of structure and energetics, their results, and the conclusions derived from these studies. The journal overcomes the unnatural separation in the current literature among the areas of structure determination, energetics, and applications, as well as builds a bridge to other chemical disciplines. Ist comprehensive coverage encompasses broad discussion of results, observation of relationships among various properties, and the description and application of structure and energy information in all domains of chemistry.
We welcome the broadest range of accounts of research in structural chemistry involving the discussion of methodologies and structures,experimental, theoretical, and computational, and their combinations. We encourage discussions of structural information collected for their chemicaland biological significance.