BactEXTRACT：用于快速提取、绘制和分析细菌生长和基因表达数据的 R Shiny 应用程序

Access Microbiology Pub Date : 2024-01-01 DOI:10.1099/acmi.0.000742.v3

Julien Dénéréaz, J. Veening

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引用次数: 0

摘要

为了简化微孔板阅读器获得的细菌生长和基因表达数据的分析和可视化，我们开发了 BactEXTRACT，这是一款直观、易用的 R Shiny 应用程序。BactEXTRACT 简化了从原始光密度、荧光和发光测量到可用于发表的图表的转换过程。该软件包提供了友好的用户界面，降低了生长曲线和基因表达分析的复杂性，具有普遍适用性。BactEXTRACT 可从 https://veeninglab.com/bactextract 网站获取。

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BactEXTRACT: an R Shiny app to quickly extract, plot and analyse bacterial growth and gene expression data

To streamline the analysis and visualization of bacterial growth and gene expression data obtained by microtitre plate readers, we developed BactEXTRACT, an intuitive, easy-to-use R Shiny application. BactEXTRACT simplifies the transition from raw optical density, fluorescence and luminescence measurements to publication-ready plots. This package offers a user-friendly interface that reduces the complexity involved in growth curve and gene expression analysis and is generally applicable. BactEXTRACT is available at https://veeninglab.com/bactextract.

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Access Microbiology

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