基于图神经网络和大型语言模型的机器学习药物发现

Tianqi Huang
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引用次数: 0

摘要

COVID-19 大流行迫切需要了解幸存者面临的长期健康影响。COVID-19 后并发症,如急性肾损伤、心律失常和中风,给公共卫生带来了重大挑战。尽管对 COVID-19 并发症进行了广泛的研究,但由于数据中存在潜在的混杂变量,对风险因素的全面了解仍然遥不可及。传统的统计模型虽然很有洞察力,但可能无法完全捕捉到这些风险因素与 COVID-19 后并发症之间的因果关系。鉴于文献中的这一空白,我们提出了一种新的方法,即使用因果推理模型,根据患者的人口统计学特征和既往病史预测发生 COVID-19 后并发症的可能性。我们的模型是在中国武汉市的 COVID-19 住院患者数据集上训练而成的,可以估算出这些因素对患者出现 COVID-19 后并发症可能性的因果影响。这种方法使我们能够在考虑潜在混杂因素的同时,分离出每个因素的因果影响,从而更准确地了解驱动这些关系的潜在机制。与预测某些结果发生概率的传统模型不同,我们的模型深入揭示了风险因素与并发症之间的因果关系,从而更可靠、更全面地了解内在机制。这种方法有助于识别高危患者,为有针对性的干预措施提供依据,并有助于制定有效的预防和治疗策略。我们的工作旨在促进目前对病毒的了解,并为公共卫生政策和干预措施提供依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Machine learning drug discovery based on graph neural network and large language model
The COVID-19 pandemic has presented an urgent need to understand the long-term health implications faced by survivors. Post-COVID-19 complications, such as acute kidney injury, arrhythmia, and stroke, pose significant challenges to public health. Despite extensive research on COVID-19 complications, a comprehensive understanding of the risk factors remains elusive due to the potential confounding variables present in the data. Traditional statistical models, while insightful, may not fully capture the causal relationships between these risk factors and post-COVID-19 complications. Motivated by this gap in the literature, we propose a novel approach using causal inference models to predict the likelihood of post-COVID-19 complications based on patient demographics and pre-existing conditions. Our model, trained on a dataset of COVID-19 inpatients in Wuhan Province, China, estimates the causal effect of these factors on the likelihood of patients experiencing post-COVID-19 complications. This approach allows us to isolate the causal impact of each factor while accounting for potential confounders, providing a more accurate understanding of the underlying mechanisms driving these relationships. Unlike traditional models that predict the probability of certain outcomes, our model provides insights into the causal relationships between risk factors and complications, offering a more reliable and comprehensive understanding of the underlying mechanisms. This approach can help identify at-risk patients, inform targeted interventions, and contribute to the development of effective prevention and treatment strategies. Our work aims to contribute to the current understanding of the virus and inform public health policies and interventions.
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