Nataliya Budaeva, Stefanie Agne, Pedro A Ribeiro, Nicolas Straube, Michaela Preick, Michael Hofreiter
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Obtaining DNA sequence information from wet-collection museum specimens of marine annelids is often impeded by the use of formaldehyde and/or long-term storage in ethanol resulting in DNA degradation and cross-linking.</p><p><strong>Results: </strong>The application of ancient DNA extraction methodology in combination with single-stranded DNA library preparation and target gene capture resulted in successful sequencing of a 110-year-old collection specimen of quill worms. Furthermore, a 40-year-old specimen of quill worms was successfully sequenced using a standard extraction protocol for modern samples, PCR and Sanger sequencing. Our study presents the first molecular analysis of Hyalinoecia species including the previously known species Hyalinoecia robusta, H. tubicloa, H. artifex, and H. longibranchiata, and a potentially undescribed species from equatorial western Africa morphologically indistinguishable from H. tubicola. The study also investigates the distribution of these five Hyalinoecia species. Reassessing the distribution of H. robusta reveals a geographical range covering both the Atlantic and the Indian Oceans as indicated by molecular data obtained from recent and historical specimens.</p><p><strong>Conclusion: </strong>Our results represent an example of a very wide geographical distribution of a brooding deep-sea annelid with a complex reproduction strategy and seemingly very limited dispersal capacity of its offspring, and highlights the importance of molecular information from museum specimens for integrative annelid taxonomy and biogeography.</p>","PeriodicalId":55142,"journal":{"name":"Frontiers in Zoology","volume":"21 1","pages":"1"},"PeriodicalIF":2.6000,"publicationDate":"2024-01-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10795374/pdf/","citationCount":"0","resultStr":"{\"title\":\"Wide-spread dispersal in a deep-sea brooding polychaete: the role of natural history collections in assessing the distribution in quill worms (Onuphidae, Annelida).\",\"authors\":\"Nataliya Budaeva, Stefanie Agne, Pedro A Ribeiro, Nicolas Straube, Michaela Preick, Michael Hofreiter\",\"doi\":\"10.1186/s12983-023-00520-0\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background: </strong>Modern integrative taxonomy-based annelid species descriptions are detailed combining morphological data and, since the last decades, also molecular information. 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引用次数: 0
摘要
背景:现代基于综合分类学的无脊椎动物物种描述非常详细,不仅结合了形态学数据,而且自过去几十年以来还结合了分子信息。历史上的物种描述往往比较简短,缺乏此类细节。过去采用西方文献中的物种名称导致许多物种的分布范围被认为是世界性的,在许多情况下,后来发现这些物种包括具有微妙形态差异的隐生或假隐生品系。自然历史藏品和数据库有助于评估物种的地理分布范围,但这取决于正确的物种鉴定。从湿采集的海洋无脊椎动物博物馆标本中获取 DNA 序列信息通常会受到阻碍,因为使用甲醛和/或在乙醇中长期保存会导致 DNA 降解和交联:结果:应用古老的 DNA 提取方法,结合单链 DNA 文库制备和目标基因捕获,成功地对一件有 110 年历史的被毛蚓标本进行了测序。此外,采用现代样本的标准提取方案、PCR 和 Sanger 测序法,也成功地对一个 40 年前的被毛蚓标本进行了测序。我们的研究首次对鞘翅目昆虫物种进行了分子分析,其中包括以前已知的物种Hyalinoecia robusta、H. tubicloa、H. artifex和H. longibranchiata,以及来自赤道西部非洲、形态上与H. tubicola没有区别的潜在未描述物种。该研究还调查了这 5 个 Hyalinoecia 物种的分布情况。根据从近期和历史标本中获得的分子数据,重新评估 H. robusta 的分布显示,其地理范围覆盖大西洋和印度洋:我们的研究结果代表了一个具有复杂繁殖策略且其后代的扩散能力似乎非常有限的繁殖型深海无脊椎动物的广泛地理分布,并突出了来自博物馆标本的分子信息对于综合无脊椎动物分类学和生物地理学的重要性。
Wide-spread dispersal in a deep-sea brooding polychaete: the role of natural history collections in assessing the distribution in quill worms (Onuphidae, Annelida).
Background: Modern integrative taxonomy-based annelid species descriptions are detailed combining morphological data and, since the last decades, also molecular information. Historic species descriptions are often comparatively brief lacking such detail. Adoptions of species names from western literature in the past led to the assumption of cosmopolitan ranges for many species, which, in many cases, were later found to include cryptic or pseudocryptic lineages with subtle morphological differences. Natural history collections and databases can aid in assessing the geographic ranges of species but depend on correct species identification. Obtaining DNA sequence information from wet-collection museum specimens of marine annelids is often impeded by the use of formaldehyde and/or long-term storage in ethanol resulting in DNA degradation and cross-linking.
Results: The application of ancient DNA extraction methodology in combination with single-stranded DNA library preparation and target gene capture resulted in successful sequencing of a 110-year-old collection specimen of quill worms. Furthermore, a 40-year-old specimen of quill worms was successfully sequenced using a standard extraction protocol for modern samples, PCR and Sanger sequencing. Our study presents the first molecular analysis of Hyalinoecia species including the previously known species Hyalinoecia robusta, H. tubicloa, H. artifex, and H. longibranchiata, and a potentially undescribed species from equatorial western Africa morphologically indistinguishable from H. tubicola. The study also investigates the distribution of these five Hyalinoecia species. Reassessing the distribution of H. robusta reveals a geographical range covering both the Atlantic and the Indian Oceans as indicated by molecular data obtained from recent and historical specimens.
Conclusion: Our results represent an example of a very wide geographical distribution of a brooding deep-sea annelid with a complex reproduction strategy and seemingly very limited dispersal capacity of its offspring, and highlights the importance of molecular information from museum specimens for integrative annelid taxonomy and biogeography.
期刊介绍:
Frontiers in Zoology is an open access, peer-reviewed online journal publishing high quality research articles and reviews on all aspects of animal life.
As a biological discipline, zoology has one of the longest histories. Today it occasionally appears as though, due to the rapid expansion of life sciences, zoology has been replaced by more or less independent sub-disciplines amongst which exchange is often sparse. However, the recent advance of molecular methodology into "classical" fields of biology, and the development of theories that can explain phenomena on different levels of organisation, has led to a re-integration of zoological disciplines promoting a broader than usual approach to zoological questions. Zoology has re-emerged as an integrative discipline encompassing the most diverse aspects of animal life, from the level of the gene to the level of the ecosystem.
Frontiers in Zoology is the first open access journal focusing on zoology as a whole. It aims to represent and re-unite the various disciplines that look at animal life from different perspectives and at providing the basis for a comprehensive understanding of zoological phenomena on all levels of analysis. Frontiers in Zoology provides a unique opportunity to publish high quality research and reviews on zoological issues that will be internationally accessible to any reader at no cost.
The journal was initiated and is supported by the Deutsche Zoologische Gesellschaft, one of the largest national zoological societies with more than a century-long tradition in promoting high-level zoological research.