对 Swasa Kudori 片剂进行硅网络药理学分析和分子对接验证,以筛选可用于治疗哮喘的植物成分。

3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology
Karthik Sekaran, Rinku Polachirakkal Varghese, Ashwini Karthik, K Sasikumar, M S Shree Devi, P Sathiyarajeswaran, C George Priya Doss
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引用次数: 0

摘要

传统药物在治疗一系列呼吸系统相关疾病方面具有重要作用。本文展示了从一种名为 Swasa Kudori Tablet 的经典释迦多草药配方中筛选出的可用于治疗哮喘的活性植物成分。经鉴定,Swasa Kudori 中的植物成分为桔梗、黑瓜蒌和(辅药)Abies webbiana。活性化学成分是通过具有生物学意义的化学实体(ChEBI)数据库提取的。根据药理活性,利用 DIGEP-Pred 数据库确定了每种化合物的基因靶标。筛选出 32 个 Pa> 0.7 的基因,在与 GeneCards 和 DisGeNET 数据库中报告的哮喘基因进行基因重叠评估后,选出目标标记。确定了 10 个共同的标记,如 ADIPOQ、CASP8、CAT、CCL2、CD86、FKBP5、HMOX1、NFE2L2、TIMP1、VDR,并将其列为分子靶标。药代动力学评估(ADME)显示,5 种天然药物化合物 2-5-7-三羟基-2-(4-羟基苯基)-2,3-二氢-4H-色烯-4-酮、(+)-儿茶素-3'-甲醚、呋喃烯酮、5-羟基-4',7-二甲氧基黄烷酮和松果菊素具有更好的药效。进一步筛选确定了目标(HMOX1)和药物(pinocembrin),以便进行分子对接评估。Pinocembrin 与 HO-1 的对接亲和力为 -8.0 kcal/mol。MD 模拟研究证实了对接研究,因为在模拟轨迹中,HO-1 与 pinocembrin 的复合物保持稳定。目前的研究结果表明,传统药物作为治疗哮喘的潜在候选药物具有重要意义。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
In silico network pharmacology analysis and molecular docking validation of Swasa Kudori tablet for screening druggable phytoconstituents of asthma.

Traditional medicines are impactful in treating a cluster of respiratory-related illnesses. This paper demonstrates screening active, druggable phytoconstituents from a classical Siddha-based poly-herbal formulation called Swasa Kudori Tablet to treat asthma. The phytoconstituents of Swasa Kudori are identified as Calotropis gigantea, Piper nigrum, and (Co-drug) Abies webbiana. Active chemical compounds are extracted with the Chemical Entities of Biological Interest (ChEBI) database. The gene targets of each compound are identified based on the pharmacological activity using the DIGEP-Pred database. Thirty-two genes showing Pa> 0.7 is screened, and the target markers are selected after performing gene overlap evaluation with the asthma genes reported in GeneCards and DisGeNET database. Ten markers are identified, such as ADIPOQ, CASP8, CAT, CCL2, CD86, FKBP5, HMOX1, NFE2L2, TIMP1, VDR, in common, listed as molecular targets. Pharmacokinetic assessment (ADME) revealed five natural drug compounds 2-5-7-trihydroxy-2-(4-hydroxyphenyl)-2,3-dihydro-4H-chromen-4-one, (+)-catechin-3'-methyl ether, futoenone, 5-hydroxy-4',7-dimethoxyflavanone, and pinocembrin showing better druggability. Further screening delineates the target (HMOX1) and drug (pinocembrin) for molecular docking evaluation. When docked with HO-1, Pinocembrin showed a binding affinity of -8.0 kcal/mol. MD simulation studies substantiate the docking studies as HO-1 in complex with pinocembrin remains stable in the simulated trajectory. The current findings exhibit the significance of traditional medicines as potential drug candidates against asthma.

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来源期刊
Advances in protein chemistry and structural biology
Advances in protein chemistry and structural biology BIOCHEMISTRY & MOLECULAR BIOLOGY-
CiteScore
7.40
自引率
0.00%
发文量
66
审稿时长
>12 weeks
期刊介绍: Published continuously since 1944, The Advances in Protein Chemistry and Structural Biology series has been the essential resource for protein chemists. Each volume brings forth new information about protocols and analysis of proteins. Each thematically organized volume is guest edited by leading experts in a broad range of protein-related topics.
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