q-RASTR 模型用于预测各种有毒化学物质对吡咯并蚜的影响。

IF 2.3 3区 环境科学与生态学 Q3 CHEMISTRY, MULTIDISCIPLINARY
V Ghosh, A Bhattacharjee, A Kumar, P K Ojha
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引用次数: 0

摘要

一系列种类繁多的有机化合物对生物体的健康和环境造成了严重的有害影响。在公开使用之前,确定化合物的毒性结构并对其进行评估至关重要。本研究旨在利用 q-RASTR(结构-毒性关系定量读取)模型确定四膜虫毒性化合物的结构特征。该模型是利用 RASTR 和二维描述符开发的,数据集包含 1792 种化合物,这些化合物对模式生物吡咯并噬菌体具有确定的终点(pIGC50)。在本研究中,根据活性/性质将整个数据集分为训练集和测试集,并利用 r2、Q2F1 和 Q2 值分别为 0.739、0.767 和 0.735 的六个描述符(三个潜变量)建立了 q-RASTR 模型。利用国际公认的内部和外部验证标准对生成的模型进行了全面验证,以评估模型的可靠性和可预测性。结果表明,高分子量、芳香羟基、氮、双键和疏水性会增加有机化合物的毒性。目前的研究证明了 RASTR 算法在 QSTR 模型开发中的适用性,该算法可用于预测有毒化学物质(pIGC50)对吡咯并蚜的毒性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
q-RASTR modelling for prediction of diverse toxic chemicals towards T. pyriformis.

A series of diverse organic compounds impose serious detrimental effects on the health of living organisms and the environment. Determination of the structural aspects of compounds that impart toxicity and evaluation of the same is crucial before public usage. The present study aims to determine the structural characteristics of compounds for Tetrahymena pyriformis toxicity using the q-RASTR (Quantitative Read Across Structure-Toxicity Relationship) model. It was developed using RASTR and 2-D descriptors for a dataset of 1792 compounds with defined endpoint (pIGC50) against a model organism, T. pyriformis. For the current study, the whole dataset was divided based on activity/property into the training and test sets, and the q-RASTR model was developed employing six descriptors (three latent variables) having r2, Q2F1 and Q2 values of 0.739, 0.767, and 0.735, respectively. The generated model was thoroughly validated using internationally recognized internal and external validation criteria to assess the model's dependability and predictability. It was highlighted that high molecular weight, aromatic hydroxyls, nitrogen, double bonds, and hydrophobicity increase the toxicity of organic compounds. The current study demonstrates the applicability of the RASTR algorithm in QSTR model development for the prediction of toxic chemicals (pIGC50) towards T. pyriformis.

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来源期刊
CiteScore
5.20
自引率
20.00%
发文量
78
审稿时长
>24 weeks
期刊介绍: SAR and QSAR in Environmental Research is an international journal welcoming papers on the fundamental and practical aspects of the structure-activity and structure-property relationships in the fields of environmental science, agrochemistry, toxicology, pharmacology and applied chemistry. A unique aspect of the journal is the focus on emerging techniques for the building of SAR and QSAR models in these widely varying fields. The scope of the journal includes, but is not limited to, the topics of topological and physicochemical descriptors, mathematical, statistical and graphical methods for data analysis, computer methods and programs, original applications and comparative studies. In addition to primary scientific papers, the journal contains reviews of books and software and news of conferences. Special issues on topics of current and widespread interest to the SAR and QSAR community will be published from time to time.
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