利用混合正弦余弦和布谷鸟搜索算法优化基因选择和癌症分类

IF 3.5 3区 医学 Q1 HEALTH CARE SCIENCES & SERVICES
Abrar Yaqoob, Navneet Kumar Verma, Rabia Musheer Aziz
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引用次数: 0

摘要

基因表达数据集提供了有关各种生物过程的广泛信息。然而,由于存在冗余和不重要的基因,很难在高维生物数据中找到重要基因。为了克服这一障碍,人们创造了许多特征选择(FS)技术。为了在复杂的生物数据中识别重要基因,提高特征选择方法的有效性和精确性至关重要。在这项工作中,我们提出了一种名为正弦余弦和布谷鸟搜索算法(SCACSA)的基因选择新方法。这种混合方法旨在与著名的机器学习分类器支持向量机(SVM)配合使用。利用乳腺癌数据集,对混合基因选择算法的性能进行了仔细评估,并与其他特征选择方法进行了比较。为了提高特征集的质量,我们在第一步使用了最小冗余最大相关性(mRMR)作为过滤策略。然后使用混合 SCACSA 方法来增强和优化基因选择过程。最后,我们使用 SVM 分类器根据所选基因对数据集进行分类。鉴于基因选择在揭示复杂生物数据集方面的关键作用,SCACSA 成为癌症数据集分类的宝贵工具。这些发现有助于医疗从业人员在诊断癌症时做出明智的决定,并为他们在复杂的基因表达数据世界中遨游提供了宝贵的工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Optimizing Gene Selection and Cancer Classification with Hybrid Sine Cosine and Cuckoo Search Algorithm.

Optimizing Gene Selection and Cancer Classification with Hybrid Sine Cosine and Cuckoo Search Algorithm.

Gene expression datasets offer a wide range of information about various biological processes. However, it is difficult to find the important genes among the high-dimensional biological data due to the existence of redundant and unimportant ones. Numerous Feature Selection (FS) techniques have been created to get beyond this obstacle. Improving the efficacy and precision of FS methodologies is crucial in order to identify significant genes amongst complicated complex biological data. In this work, we present a novel approach to gene selection called the Sine Cosine and Cuckoo Search Algorithm (SCACSA). This hybrid method is designed to work with well-known machine learning classifiers Support Vector Machine (SVM). Using a dataset on breast cancer, the hybrid gene selection algorithm's performance is carefully assessed and compared to other feature selection methods. To improve the quality of the feature set, we use minimum Redundancy Maximum Relevance (mRMR) as a filtering strategy in the first step. The hybrid SCACSA method is then used to enhance and optimize the gene selection procedure. Lastly, we classify the dataset according to the chosen genes by using the SVM classifier. Given the pivotal role gene selection plays in unraveling complex biological datasets, SCACSA stands out as an invaluable tool for the classification of cancer datasets. The findings help medical practitioners make well-informed decisions about cancer diagnosis and provide them with a valuable tool for navigating the complex world of gene expression data.

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来源期刊
Journal of Medical Systems
Journal of Medical Systems 医学-卫生保健
CiteScore
11.60
自引率
1.90%
发文量
83
审稿时长
4.8 months
期刊介绍: Journal of Medical Systems provides a forum for the presentation and discussion of the increasingly extensive applications of new systems techniques and methods in hospital clinic and physician''s office administration; pathology radiology and pharmaceutical delivery systems; medical records storage and retrieval; and ancillary patient-support systems. The journal publishes informative articles essays and studies across the entire scale of medical systems from large hospital programs to novel small-scale medical services. Education is an integral part of this amalgamation of sciences and selected articles are published in this area. Since existing medical systems are constantly being modified to fit particular circumstances and to solve specific problems the journal includes a special section devoted to status reports on current installations.
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