用于预测结直肠癌转移和预后的放射组学和基因组学衍生模型

IF 3.3 3区 医学 Q2 ONCOLOGY
Xue Li, Meng Wu, Min Wu, Jie Liu, Li Song, Jiasi Wang, Jun Zhou, Shilin Li, Hang Yang, Jun Zhang, Xinwu Cui, Zhenyu Liu, Fanxin Zeng
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引用次数: 0

摘要

约50%的结直肠癌(CRC)患者会发生转移,且预后较差,因此,在临床治疗中有效预测转移是非常必要的。在这项研究中,我们旨在通过同时考虑放射组学和转录组学,建立预测 CRC 患者转移的机器学习模型。本研究收集了来自三个中心的1023例CRC患者,并将其分为5个队列(达州市中心医院517例,南充市中心医院120例,癌症基因组图谱(TCGA)386例)。从CT图像上的肿瘤病灶中提取了854个放射组学特征,并通过RNA测序从非转移和转移肿瘤组织中获得了217个差异表达基因。在放射转录组学(RT)分析的基础上,建立了一个新的RT模型,并通过遗传算法(GA)进行了验证。白细胞介素(IL)-26是RT模型中的一个生物标志物,其在CRC转移中的生物学功能得到了验证。此外,通过逐步回归筛选出 15 个放射组学变量,这些变量与 IL26 表达水平高度相关。最后,通过将 GA 和逐步回归分析与放射组学特征相结合,建立了放射组学模型(RA)。在两个独立的验证队列中,RA模型在转移预测方面表现出了良好的鉴别能力和准确性。我们设计了多中心、多规模的队列来构建和验证用于预测 CRC 转移的新型放射组学和基因组学联合模型。总之,RT模型和RA模型可帮助临床医生指导CRC患者的个性化诊断和治疗方案选择。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A radiomics and genomics-derived model for predicting metastasis and prognosis in colorectal cancer.

Approximately 50% of colorectal cancer (CRC) patients would develop metastasis with poor prognosis, therefore, it is necessary to effectively predict metastasis in clinical treatment. In this study, we aimed to establish a machine-learning model for predicting metastasis in CRC patients by considering radiomics and transcriptomics simultaneously. Here, 1023 patients with CRC from three centers were collected and divided into five queues (Dazhou Central Hospital n = 517, Nanchong Central Hospital n = 120 and the Cancer Genome Atlas (TCGA) n = 386). A total of 854 radiomics features were extracted from tumor lesions on CT images, and 217 differentially expressed genes were obtained from non-metastasis and metastasis tumor tissues using RNA sequencing. Based on radiotranscriptomic (RT) analysis, a novel RT model was developed and verified through genetic algorithms (GA). Interleukin (IL)-26, a biomarker in RT model, was verified for its biological function in CRC metastasis. Furthermore, 15 radiomics variables were screened through stepwise regression, which was highly correlated with the IL26 expression level. Finally, a radiomics model (RA) was established by combining GA and stepwise regression analysis with radiomics features. The RA model exhibited favorable discriminatory ability and accuracy for metastasis prediction in two independent verification cohorts. We designed multicenter, multi-scale cohorts to construct and verify novel combined radiomics and genomics models for predicting metastasis in CRC. Overall, RT model and RA model might help clinicians in directing personalized diagnosis and therapeutic regimen selection for patients with CRC.

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来源期刊
Carcinogenesis
Carcinogenesis 医学-肿瘤学
CiteScore
9.20
自引率
2.10%
发文量
95
审稿时长
1 months
期刊介绍: Carcinogenesis: Integrative Cancer Research is a multi-disciplinary journal that brings together all the varied aspects of research that will ultimately lead to the prevention of cancer in man. The journal publishes papers that warrant prompt publication in the areas of Biology, Genetics and Epigenetics (including the processes of promotion, progression, signal transduction, apoptosis, genomic instability, growth factors, cell and molecular biology, mutation, DNA repair, genetics, etc.), Cancer Biomarkers and Molecular Epidemiology (including genetic predisposition to cancer, and epidemiology), Inflammation, Microenvironment and Prevention (including molecular dosimetry, chemoprevention, nutrition and cancer, etc.), and Carcinogenesis (including oncogenes and tumor suppressor genes in carcinogenesis, therapy resistance of solid tumors, cancer mouse models, apoptosis and senescence, novel therapeutic targets and cancer drugs).
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