将核核糖体 DNA(ITS2)和叶绿体 DNA(rbcL 和 trnL-F)区域作为鉴定印度尼西亚北苏门答腊省 Zingiber loerzingii Valeton 的合适 DNA 条形码

Q4 Agricultural and Biological Sciences
E. Prasetya, Lazuardi Lazuardi, Fauziyah Harahap, Yuanita Rachmawati, Yusnaeni Yusuf, Said Iskandar Al Idrus, P. Prastowo
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引用次数: 0

摘要

Zingiber loerzingii Valeton 是一种生长在印度尼西亚亚齐和北苏门答腊的茜草科茜草属植物,花朵粘稠,呈黄白色,雄蕊呈深橙色。Z. loerzingii 是北苏门答腊的特有种,分布范围非常有限。国际自然及自然资源保护联盟将这种植物列为易危植物。本研究旨在检验 DNA 条形码核 DNA(ITS2)和叶绿体 DNA(rbcL 和 trnL-F)识别 Z. loerzingii 植物的潜力。研究样本取自 Z. loerzingii 在印度尼西亚北苏门答腊的两个主要分布区,即 Sibolangit 自然保护区和 Tangkahan 保护林。结果表明,在系统发育分析中,所有使用的 DNA 条形码标记都能将 Z. loerzingii 划归为同一组别。与 rbcL 和 trnL-F 标记相比,ITS 标记是最有效的 Zingiberaceae 物种分类标记。与 rbcL 和 trnL-F 标记相比,ITS2 标记的种内和种间遗传距离重叠程度最低。这项研究有望提供与 Z. loerzingii 的 DNA 条形码相关的信息,从而保护这种珍稀植物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Region of Nuclear Ribosomal DNA (ITS2) and Chloroplast DNA (rbcL and trnL-F) as A Suitable DNA Barcode for Identification of Zingiber loerzingii Valeton From North Sumatera, Indonesia
Zingiber loerzingii Valeton is one of the species in the Zingiberaceae family found throughout Aceh and North Sumatra, Indonesia, with slimy flowers, yellowish white color, and dark orange stamens. Z. loerzingii is endemic in North Sumatra with a very limited distribution. The International Union for Conservation of Nature and Natural Resources classifies this plant into the vulnerable ones category. This study aims to examine the potential of DNA barcoding from nuclear DNA (ITS2) and DNA chloroplasts (rbcL and trnL-F) to identify Z. loerzingii plants. The research sample was obtained from two main distribution areas of Z. loerzingii in North Sumatra, Indonesia, namely Sibolangit Nature Reserve and Tangkahan Conservation Forest. The results showed that all the DNA barcode markers used were able to classify Z. loerzingii into the same group in the phylogenetic analysis. ITS marker is the most effective marker for classifying Zingiberaceae species compared to rbcL and trnL-F markers. The ITS2 marker has the lowest level of intraspecific and intraspecific genetic distance overlap compared to the rbcL and trnL-F markers. This research is expected to provide information related to the DNA barcode of Z. loerzingii in an effort to conserve this rare plant.
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来源期刊
Journal of Tropical Biodiversity and Biotechnology
Journal of Tropical Biodiversity and Biotechnology Immunology and Microbiology-Applied Microbiology and Biotechnology
CiteScore
1.10
自引率
0.00%
发文量
40
审稿时长
12 weeks
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