摘要 9 - 与其他结缔组织疾病相比,系统性红斑狼疮中鞘磷脂-1-磷酸磷酸酶的表达:生物信息学分析

S. Tomo, Maya Gopalakrishnan, Mithu Banerjee
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引用次数: 0

摘要

背景鞘磷脂是质膜的主要成分,在各种酶的作用下生成信号分子。鞘磷脂途径的代谢产物已被确认在各种细胞过程中发挥着重要的调节作用。鞘磷脂-1-磷酸(S1P)是鞘磷脂途径的主要中间分子之一。在细胞内形成的鞘磷脂-1-磷酸可被 S1P 磷酸酶(SGPP1 和 SGPP2)去磷酸化,这是一个可逆的过程。鞘脂通路失调与多种结缔组织疾病有关。本研究旨在评估和比较系统性红斑狼疮患者与其他结缔组织疾病患者的 SGPP1 和 SGPP2 基因表达差异。方法 目前的生物信息学分析研究是利用公开可用的数据集进行的。研究人员利用ADEx:自身免疫性疾病探索者数据库(Autoimmune Diseases Explorer Database)中与结缔组织疾病相关的现有数据集,探索系统性红斑狼疮患者与其他结缔组织疾病患者在鞘脂通路中的差异表达基因。将从数据集中确定鞘脂通路中 SGPP1 和 SGPP2 基因的差异表达。结果 从 ADEx 数据库中确定了 SGPP1 和 SGPP2 的差异表达。共有 51 个数据集被用于分析,其中包括 17 个 RA 数据集、9 个 Sjogren 综合征数据集、20 个系统性红斑狼疮数据集和 5 个系统性硬化症数据集。分析过程中使用了 0.01 的 FDR 过滤器。经过分析,我们发现在 2 个 RA 数据集和 1 个 Sjogren 综合征数据集中,SGPP1 的表达量有所增加;在 1 个系统性硬化症数据集中,SGPP2 的表达量有所增加。然而,在系统性红斑狼疮数据集中,观察到 SGPP1 和 SGPP2 的表达下降。结论 我们的研究表明,与其他 CTD 相比,系统性红斑狼疮患者的 SGPP1 和 SGPP1 有独特的下调趋势。这为广泛探讨的 Sphingosine-1-phosphate 相关失调在系统性红斑狼疮中的应用提供了新的视角,有助于设计新型靶向疗法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Abstract 9 — Sphingosine-1-Phosphate Phosphatase Expression in SLE when Compared with Other Connective Tissue Disorders: A Bioinformatic Analysis
Background Sphingolipids are major components of the plasma membrane which are acted upon by various enzymes to generate signaling molecules. The metabolites of the sphingolipid pathway have been identified to play a major regulatory role in various cellular processes. Sphingosine-1-phosphate (S1P) is one of the major intermediary molecules of the sphingolipid pathway. Sphingosine-1-phosphate, formed in the cell can be dephosphorylated by S1P-phosphatase (SGPP1 and SGPP2), which is a reversible process. Dysregulation of the sphingolipid pathway has been associated with multiple connective tissue disorders. The current study aimed to assess and compare differential gene expressions of SGPP1 and SGPP2 in patients with SLE when compared with other connective tissue diseases. Methods The current bioinformatics analytic study was conducted using publicly available datasets. Existing datasets from the ADEx: Autoimmune Diseases Explorer Database pertaining to connective tissue disorders were used to explore differentially expressed genes involved in sphingolipid pathways in patients with SLE when compared with other CTD. The differential expression of SGPP1 and SGPP2 genes of the sphingolipid pathway will be identified from datasets. Results The differential expression of SGPP1 and SGPP2 has been identified from the ADEx database. A total of 51 datasets, comprising 17 datasets of RA, 9 datasets of Sjogren Syndrome, 20 datasets of SLE, and 5 datasets of Systemic Sclerosis were used for analysis. An FDR filter of 0.01 was used during the analysis. On analysis, we observed an increased expression of SGPP1 in 2 RA datasets, 1 Sjogren Syndrome, and an increased expression of SGPP2 in 1 Systemic sclerosis dataset. However, in SLE datasets, the SGPP1 and SGPP2 were observed to have decreased expression. Conclusion Our study demonstrates a unique trend of SGPP1 and SGPP1 downregulated in SLE patients when compared with other CTD. This provides additional insight into the widely explored Sphingosine-1-phosphate-related dysregulation in SLE and will enable in devising of novel targeted therapy.
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