{"title":"隐蔽自走生物的简单追踪","authors":"D. Noto, H. Ulloa","doi":"10.1088/1361-6501/ad1813","DOIUrl":null,"url":null,"abstract":"Deepening our understanding of animals’ collective motions represents a multidisciplinary goal. Yet, quantifying the motions of hundreds of animals in the laboratory and nature posits a fundamental challenge for digital image processing: How do we track each object out of the crowd while allowing them to move freely in a three-dimensional (3D) domain? Here, we present a simple tracking strategy to reconstruct 3D trajectories with the aid of a mirror, even if moving objects experience occlusion. We explain the method using synthetically generated datasets and apply it to measure collective motions of phototactic zooplankton, Daphnia magna, swimming in a lab-scale aquarium at intermediate Reynolds numbers, 1<Re<13 . The method enables measuring statistics of characteristic features of D. magna swarm, including sinking velocities and flapping frequencies. Beyond the lab-scale animal tracking, we foresee further implementations of the method to study wild animals freely behaving in 3D environments irrespective of their species.","PeriodicalId":18526,"journal":{"name":"Measurement Science and Technology","volume":"361 14","pages":""},"PeriodicalIF":3.4000,"publicationDate":"2023-12-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Simple tracking of occluded self-propelled organisms\",\"authors\":\"D. Noto, H. Ulloa\",\"doi\":\"10.1088/1361-6501/ad1813\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Deepening our understanding of animals’ collective motions represents a multidisciplinary goal. Yet, quantifying the motions of hundreds of animals in the laboratory and nature posits a fundamental challenge for digital image processing: How do we track each object out of the crowd while allowing them to move freely in a three-dimensional (3D) domain? Here, we present a simple tracking strategy to reconstruct 3D trajectories with the aid of a mirror, even if moving objects experience occlusion. We explain the method using synthetically generated datasets and apply it to measure collective motions of phototactic zooplankton, Daphnia magna, swimming in a lab-scale aquarium at intermediate Reynolds numbers, 1<Re<13 . The method enables measuring statistics of characteristic features of D. magna swarm, including sinking velocities and flapping frequencies. Beyond the lab-scale animal tracking, we foresee further implementations of the method to study wild animals freely behaving in 3D environments irrespective of their species.\",\"PeriodicalId\":18526,\"journal\":{\"name\":\"Measurement Science and Technology\",\"volume\":\"361 14\",\"pages\":\"\"},\"PeriodicalIF\":3.4000,\"publicationDate\":\"2023-12-28\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Measurement Science and Technology\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1088/1361-6501/ad1813\",\"RegionNum\":3,\"RegionCategory\":\"工程技术\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"ENGINEERING, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Measurement Science and Technology","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1088/1361-6501/ad1813","RegionNum":3,"RegionCategory":"工程技术","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"ENGINEERING, MULTIDISCIPLINARY","Score":null,"Total":0}
Simple tracking of occluded self-propelled organisms
Deepening our understanding of animals’ collective motions represents a multidisciplinary goal. Yet, quantifying the motions of hundreds of animals in the laboratory and nature posits a fundamental challenge for digital image processing: How do we track each object out of the crowd while allowing them to move freely in a three-dimensional (3D) domain? Here, we present a simple tracking strategy to reconstruct 3D trajectories with the aid of a mirror, even if moving objects experience occlusion. We explain the method using synthetically generated datasets and apply it to measure collective motions of phototactic zooplankton, Daphnia magna, swimming in a lab-scale aquarium at intermediate Reynolds numbers, 1
期刊介绍:
Measurement Science and Technology publishes articles on new measurement techniques and associated instrumentation. Papers that describe experiments must represent an advance in measurement science or measurement technique rather than the application of established experimental technique. Bearing in mind the multidisciplinary nature of the journal, authors must provide an introduction to their work that makes clear the novelty, significance, broader relevance of their work in a measurement context and relevance to the readership of Measurement Science and Technology. All submitted articles should contain consideration of the uncertainty, precision and/or accuracy of the measurements presented.
Subject coverage includes the theory, practice and application of measurement in physics, chemistry, engineering and the environmental and life sciences from inception to commercial exploitation. Publications in the journal should emphasize the novelty of reported methods, characterize them and demonstrate their performance using examples or applications.