描述 Neoarius 属的 8 个新线粒体基因组以及对栗鼠科(丝形目)系统发育的考虑

Luiz Guilherme Pereira Pimentel, Iuri Batista da Silva, Igor Henrique Rodrigues-Oliveira, R. Pasa, F. Menegídio, K. Kavalco
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引用次数: 0

摘要

被称为海洋鲶鱼的 Neoarius 属是鲤科的一个类群,由发现于大洋洲的 10 个物种组成。该属的所有物种都没有线粒体基因组的描述,而线粒体基因组在系统发育和分子进化研究中具有极高的价值。本研究选取了 Neoarius 属中的 8 个物种:Neoarius utarus、Neoarius midgleyi、Neoarius graeffei、Neoarius leptaspis、Neoarius berenyi、Neoarius paucus、Neoarius pectoralis 和 Neoarius aff.这八个物种的 DNA 序列是通过 NCBI 序列读取档案(SRA)数据库获得的,线粒体基因组是通过银河平台上的 NOVOplasty 工具组装的,随后用 MitoAnnotator 工具进行了注释。然后,我们利用有丝分裂基因组中的蛋白质编码基因来估算该物种组内的系统发生关系,其中包括 NCBI 提供的另外 7 个有丝分裂基因组。在所有物种中,线粒体基因组呈现出 13 个蛋白质编码基因、2 个 rRNA 基因、22 个 tRNA 基因和 1 个 D 环。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Description of eight new mitochondrial genomes for the genus Neoarius and phylogenetic considerations for the family Ariidae (Siluriformes)
The genus Neoarius, known as marine catfish, is a group of the family Ariidae, composed of 10 species found in Oceania. None of the species in this genus have their mitochondrial genome described, which is highly valuable in phylogenetic and molecular evolution studies. For the present work, eight species from the Neoarius genus were selected: Neoarius utarus, Neoarius midgleyi, Neoarius graeffei, Neoarius leptaspis, Neoarius berenyi, Neoarius paucus, Neoarius pectoralis, and Neoarius aff. graeffei. DNA sequences of the eight species were obtained through the NCBI Sequence Read Archive (SRA) database, and the mitochondrial genomes were assembled using the NOVOplasty tool on the Galaxy platform, subsequently annotated with the MitoAnnotator tool. We then utilized the protein-coding genes from the mitogenomes to estimate the phylogenetic relationships within the group, including seven additional mitogenomes available in the NCBI. In all species, the mitochondrial genomes presented 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and 1 D-loop.
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