{"title":"在不同温度下评估 SARS -CoV-2 野生型和相关变体中 Spike-hACE2 的相互作用","authors":"Nabanita Mandal, Soumya Lipsa Rath","doi":"10.3389/fphy.2023.1320437","DOIUrl":null,"url":null,"abstract":"<p>The effect of temperature on SARS-CoV-2 is frequently debated upon. There is evidence of temperature sensitivity of the viral proteins; however, how heat influences the protein–protein interaction between a SARS-CoV-2 protein and the human angiotensin-converting enzyme 2 (ACE2) receptor remains to be elucidated. Here, we studied the receptor-binding domain of the surface glycoprotein of SARS-CoV-2 wild type and variants of concern bound to the human ACE2 receptor at different temperatures through atomistic simulations. We found that although there were no major conformation changes in the protein complexes at high temperatures, the dynamics of the proteins significantly increased. There was loss of protein–protein contacts and interaction energies. Thus, the protein–protein interaction was found to be rather strong. This study would be useful for viral protein studies and the design of peptide-based vaccines and therapeutics.</p>","PeriodicalId":12507,"journal":{"name":"Frontiers in Physics","volume":"7 1","pages":""},"PeriodicalIF":1.9000,"publicationDate":"2023-12-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Evaluating the Spike–hACE2 interactions in the wild type and variants of concern of SARS -CoV-2 at different temperatures\",\"authors\":\"Nabanita Mandal, Soumya Lipsa Rath\",\"doi\":\"10.3389/fphy.2023.1320437\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p>The effect of temperature on SARS-CoV-2 is frequently debated upon. There is evidence of temperature sensitivity of the viral proteins; however, how heat influences the protein–protein interaction between a SARS-CoV-2 protein and the human angiotensin-converting enzyme 2 (ACE2) receptor remains to be elucidated. Here, we studied the receptor-binding domain of the surface glycoprotein of SARS-CoV-2 wild type and variants of concern bound to the human ACE2 receptor at different temperatures through atomistic simulations. We found that although there were no major conformation changes in the protein complexes at high temperatures, the dynamics of the proteins significantly increased. There was loss of protein–protein contacts and interaction energies. Thus, the protein–protein interaction was found to be rather strong. This study would be useful for viral protein studies and the design of peptide-based vaccines and therapeutics.</p>\",\"PeriodicalId\":12507,\"journal\":{\"name\":\"Frontiers in Physics\",\"volume\":\"7 1\",\"pages\":\"\"},\"PeriodicalIF\":1.9000,\"publicationDate\":\"2023-12-14\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Frontiers in Physics\",\"FirstCategoryId\":\"101\",\"ListUrlMain\":\"https://doi.org/10.3389/fphy.2023.1320437\",\"RegionNum\":3,\"RegionCategory\":\"物理与天体物理\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"PHYSICS, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Frontiers in Physics","FirstCategoryId":"101","ListUrlMain":"https://doi.org/10.3389/fphy.2023.1320437","RegionNum":3,"RegionCategory":"物理与天体物理","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"PHYSICS, MULTIDISCIPLINARY","Score":null,"Total":0}
Evaluating the Spike–hACE2 interactions in the wild type and variants of concern of SARS -CoV-2 at different temperatures
The effect of temperature on SARS-CoV-2 is frequently debated upon. There is evidence of temperature sensitivity of the viral proteins; however, how heat influences the protein–protein interaction between a SARS-CoV-2 protein and the human angiotensin-converting enzyme 2 (ACE2) receptor remains to be elucidated. Here, we studied the receptor-binding domain of the surface glycoprotein of SARS-CoV-2 wild type and variants of concern bound to the human ACE2 receptor at different temperatures through atomistic simulations. We found that although there were no major conformation changes in the protein complexes at high temperatures, the dynamics of the proteins significantly increased. There was loss of protein–protein contacts and interaction energies. Thus, the protein–protein interaction was found to be rather strong. This study would be useful for viral protein studies and the design of peptide-based vaccines and therapeutics.
期刊介绍:
Frontiers in Physics publishes rigorously peer-reviewed research across the entire field, from experimental, to computational and theoretical physics. This multidisciplinary open-access journal is at the forefront of disseminating and communicating scientific knowledge and impactful discoveries to researchers, academics, engineers and the public worldwide.