柑橘病原体 Phytophthora citrophthora 的参考基因组资源。

Journal of Genomics Pub Date : 2024-01-01 DOI:10.7150/jgen.89324

Heike Möller, Beatrix Coetzee, Jan van Niekerk, Lindy Joy Rose

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引用次数: 0

摘要

柑橘疫霉菌（Phytophthora citrophthora）是一种感染柑橘的卵菌病原体。它在全球柑橘种植区的发生被认为是造成作物损失的主要原因。本研究利用 PacBio HiFi 长读数高通量测序技术为柠檬疫霉菌提供了高质量的基因组资源。我们利用高质量读数成功组装了一个 48.5 Mb 的基因组，其中包含 16,409 个蛋白编码基因。这标志着第一个完整的柑橘疫霉菌基因组组装完成，为进一步了解这种破坏性柑橘病原体的致病行为和杀菌剂敏感性提供了宝贵的资源。

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Reference Genome Resource for the Citrus Pathogen Phytophthora citrophthora.

Phytophthora citrophthora is an oomycete pathogen that infects citrus. Its occurrence in citrus-growing regions worldwide is considered a major contributor to crop losses. This study presents a high-quality genome resource for P. citrophthora, which was generated using PacBio HiFi long-read high-throughput sequencing technology. We successfully assembled a 48.5 Mb genome containing 16,409 protein-coding genes from high-quality reads. This marks the first complete genome assembly of P. citrophthora, providing a valuable resource to enhance the understanding of pathogenic behaviour and fungicide sensitivity of this destructive citrus pathogen.

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来源期刊

Journal of Genomics

自引率

0.00%

发文量

审稿时长

12 weeks

期刊介绍： Journal of Genomics publishes papers of high quality in all areas of gene, genetics, genomics, proteomics, metabolomics, DNA/RNA, computational biology, bioinformatics, and other relevant areas of research and application. Articles published by the journal are rigorously peer-reviewed. Types of articles include: Research paper, Short research communication, Review or mini-reviews, Commentary, Database, Software.