双重机器学习和分子动力学:计算框架

IF 2.6 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Christos Stavrogiannis, F. Sofos, Maria Sagri, D. Vavougios, T. Karakasidis
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引用次数: 0

摘要

本研究采用数据科学和机器学习(ML)技术来揭示影响纳米尺度流体传输特性的分子机制。从文献中的实验和模拟数据中收集了四种基本单原子元素(即氩、氪、氮和氧)的粘度和热导率值,这些数据构成了进一步研究的主要数据库。这些数据涉及广泛的压力-温度(P-T)相空间,涵盖从气态到液态和超临界的流体状态。从我们的平衡分子动力学(MD)模拟中提取的新模拟数据丰富了该数据库。此外,还构建了一个机器学习(ML)框架,采用集合、经典、基于内核和堆叠算法技术,与 MD 模型并行运作,通过现有数据进行训练,并预测新相空间点的值。就算法性能而言,堆叠式和基于树的 ML 模型对所有元素都给出了最准确的结果,是中小型数据集的绝佳选择。通过这种方式,我们构建了一种双重计算方案,作为一种计算成本低廉的途径,实现了高精确度,目的是在可行的情况下取代成本高昂的实验和模拟。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Twofold Machine-Learning and Molecular Dynamics: A Computational Framework
Data science and machine learning (ML) techniques are employed to shed light into the molecular mechanisms that affect fluid-transport properties at the nanoscale. Viscosity and thermal conductivity values of four basic monoatomic elements, namely, argon, krypton, nitrogen, and oxygen, are gathered from experimental and simulation data in the literature and constitute a primary database for further investigation. The data refers to a wide pressure–temperature (P-T) phase space, covering fluid states from gas to liquid and supercritical. The database is enriched with new simulation data extracted from our equilibrium molecular dynamics (MD) simulations. A machine learning (ML) framework with ensemble, classical, kernel-based, and stacked algorithmic techniques is also constructed to function in parallel with the MD model, trained by existing data and predicting the values of new phase space points. In terms of algorithmic performance, it is shown that the stacked and tree-based ML models have given the most accurate results for all elements and can be excellent choices for small to medium-sized datasets. In such a way, a twofold computational scheme is constructed, functioning as a computationally inexpensive route that achieves high accuracy, aiming to replace costly experiments and simulations, when feasible.
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来源期刊
Computers
Computers COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS-
CiteScore
5.40
自引率
3.60%
发文量
153
审稿时长
11 weeks
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