Fatemeh Kazemzadeh, J A A Snoek, Quirinus J Voorham, Martijn G H van Oijen, Niek Hugen, Iris D Nagtegaal
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Natural language processing (NLP) and manual information extraction (IE) were applied to identify the tumors, patient characteristics, and locations of metastases.</p><p><strong>Results: </strong>The accuracy (0.90) and recall (0.94) of the NLP model outperformed manual IE (on 132 randomly selected patients). Adenocarcinoma no special type more frequently metastasizes to the lung (55.7%) and liver (51.8%), whereas, invasive lobular carcinoma mostly spread to the bone (54.4%) and liver (43.8%), respectively. Patients with tumor grade III had a higher chance of developing bone metastases (61.6%). In a subgroup of patients, we found that ER+/HER2+ patients were more likely to metastasize to the liver and bone, compared to ER-/HER2+ patients.</p><p><strong>Conclusion: </strong>This is the first large-scale study that demonstrates that artificial intelligence methods are efficient for IE from Dutch databanks. 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引用次数: 0
摘要
背景:大多数癌症的转移扩散具有相当大的异质性。随着转移性疾病患者的治疗选择越来越多,需要通过大规模研究来深入了解乳腺癌患者的转移扩散模式:方法:从荷兰全国病理数据库(PALGA)中检索了 2622 名接受尸检的转移性乳腺癌患者的记录(1974-2010 年)。应用自然语言处理(NLP)和人工信息提取(IE)来识别肿瘤、患者特征和转移位置:结果:NLP模型的准确率(0.90)和召回率(0.94)均优于人工信息提取(随机抽取132名患者)。无特殊类型的腺癌更常转移至肺部(55.7%)和肝脏(51.8%),而浸润性小叶癌则主要转移至骨骼(54.4%)和肝脏(43.8%)。肿瘤分级为 III 级的患者发生骨转移的几率更高(61.6%)。在一个亚组患者中,我们发现与ER-/HER2+患者相比,ER+/HER2+患者更有可能转移至肝脏和骨骼:这是首次大规模研究表明,人工智能方法可以有效地从荷兰数据库中提取 IE。不同的组织学亚型显示出不同的转移部位频率和组合,这可能反映了转移性乳腺癌的潜在生物学特性。
Association of metastatic pattern in breast cancer with tumor and patient-specific factors: a nationwide autopsy study using artificial intelligence.
Background: Metastatic spread is characterized by considerable heterogeneity in most cancers. With increasing treatment options for patients with metastatic disease, there is a need for insight into metastatic patterns of spread in breast cancer patients using large-scale studies.
Methods: Records of 2622 metastatic breast cancer patients who underwent autopsy (1974-2010) were retrieved from the nationwide Dutch pathology databank (PALGA). Natural language processing (NLP) and manual information extraction (IE) were applied to identify the tumors, patient characteristics, and locations of metastases.
Results: The accuracy (0.90) and recall (0.94) of the NLP model outperformed manual IE (on 132 randomly selected patients). Adenocarcinoma no special type more frequently metastasizes to the lung (55.7%) and liver (51.8%), whereas, invasive lobular carcinoma mostly spread to the bone (54.4%) and liver (43.8%), respectively. Patients with tumor grade III had a higher chance of developing bone metastases (61.6%). In a subgroup of patients, we found that ER+/HER2+ patients were more likely to metastasize to the liver and bone, compared to ER-/HER2+ patients.
Conclusion: This is the first large-scale study that demonstrates that artificial intelligence methods are efficient for IE from Dutch databanks. Different histological subtypes show different frequencies and combinations of metastatic sites which may reflect the underlying biology of metastatic breast cancer.
期刊介绍:
Breast Cancer, the official journal of the Japanese Breast Cancer Society, publishes articles that contribute to progress in the field, in basic or translational research and also in clinical research, seeking to develop a new focus and new perspectives for all who are concerned with breast cancer. The journal welcomes all original articles describing clinical and epidemiological studies and laboratory investigations regarding breast cancer and related diseases. The journal will consider five types of articles: editorials, review articles, original articles, case reports, and rapid communications. Although editorials and review articles will principally be solicited by the editors, they can also be submitted for peer review, as in the case of original articles. The journal provides the best of up-to-date information on breast cancer, presenting readers with high-impact, original work focusing on pivotal issues.