基于网络药理学和分子模拟技术的苓桂术甘汤治疗高血压的机制探讨

IF 2.7 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Qi Dong, Yu-Jiao Huang, Zhi-Yu Tao, Han-Yue Huang, Lin-Hui Luo, Ying-Qing Zhang
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引用次数: 0

摘要

基于网络药理学和分子模拟,探索灵桂术甘煎剂治疗高血压的机制。通过中药系统药理分析平台(TCMSP)筛选有效成分和潜在靶点。高血压相关靶点来自 OMIM 和 GeneCards 数据库。在 Venny 平台上筛选了药物与高血压之间的共同靶点。利用交叉靶点在 STRING 数据库中构建了蛋白质-蛋白质相互作用(PPI)网络。用 Cytoscape 对 PPI 网络中的关键靶点进行分析。使用 R 语言程序进行了基因本体(GO)功能注释和京都基因组百科全书(KEGG)通路富集分析。最后,通过分子模拟验证了主要活性成分与关键靶点的结合能力。筛选出了柚皮苷、槲皮素、山柰醇和β-谷甾醇等灵桂枝甘煎汤中的有效成分与STAT3、AKT1、TNF、IL6、JUN、PTGS2、MMP9、CASP3、TP53和MAPK3等潜在靶标的结合能力。KEGG富集分析表明,灵桂枝煎剂与高血压的共同靶点主要涉及脂质与动脉粥样硬化信号通路、糖尿病并发症中的AGE-RAGE信号通路、流体剪切应力与动脉粥样硬化以及IL17信号通路。分子模拟结果显示,柚皮素-MAPK3、槲皮素-MMP9、槲皮素-PTGS2和槲皮素-TP53的对接得分位居前四位。柚皮素-MAPK3和槲皮素-MMP9的结合自由能分别为-27.97 ± 1.41 kcal/mol和-21.15 ± 3.17 kcal/mol,十分稳定。灵桂枝煎剂治疗高血压的可能机制具有多成分、多靶点、多途径的特点。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Discussion on the mechanism of Lingguizhugan Decoction in treating hypertension based on network pharmacology and molecular simulation technology.

To explore the mechanism of Lingguizhugan Decoction in treating hypertension based on network pharmacology and molecular simulation. The active ingredients and potential targets were screened by the Systematic Pharmacological Analysis Platform of Traditional Chinese Medicine (TCMSP). Hypertension-related targets were obtained from OMIM and GeneCards databases. Common targets between drug and hypertension were screened in the Venny platform. A protein-protein interaction (PPI) network was constructed in the STRING database using intersection targets. Key targets in PPI network were analyzed by Cytoscape. R language program was used for Gene Ontology (GO) functional annotation and Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway enrichment analysis. Finally, the binding abilities of the main active ingredients to critical targets were verified by molecular simulation. Naringenin, quercetin, kaempferol, and β-sitosterol in Lingguizhugan Decoction, and potential targets such as STAT3, AKT1, TNF, IL6, JUN, PTGS2, MMP9, CASP3, TP53, and MAPK3, were screened out. KEGG Enrichment analysis revealed that the common targets of Lingguizhugan Decoction and hypertension are mainly involved in the lipid and atherosclerosis signaling pathway, AGE-RAGE signaling pathway in diabetic complications, fluid shear stress and atherosclerosis, and IL17 signaling pathway. The molecular simulation results showed that naringenin-MAPK3, quercetin-MMP9, quercetin-PTGS2, and quercetin-TP53 were the top four in the docking scores. Naringenin-MAPK3 and quercetin-MMP9 were stable, with binding free energies of -27.97 ± 1.41 kcal/mol and -21.15 ± 3.17 kcal/mol, respectively. The possible mechanism of Lingguizhugan Decoction in treating hypertension is characterized of multi-component, multi-target, and multi-pathway.Communicated by Ramaswamy H. Sarma.

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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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