基于单细胞和大容量 RNA 测序数据识别和探索衰老相关亚型以及 SERPINE1 在心力衰竭中的独特作用

IF 3.2 4区 医学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Shengnan Li, Fanliang Kong, Xuan Xu, Sifan Song, Yandan Wu, Jiayi Tong
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引用次数: 0

摘要

衰老是心力衰竭(HF)的主要风险因素,也是全球心力衰竭的主要死因。目前,衰老与心力衰竭之间的关系尚不完全清楚。本研究旨在通过研究衰老相关基因在高频心衰中的生物学意义,探索新的高频心衰诊断生物标志物、分子分型和治疗策略。研究共筛选出157个差异表达基因(DEGs),并对这些基因进行了功能富集分析,发现HF的进展与衰老、免疫过程和新陈代谢密切相关。进一步确定了六个与高频特异性衰老相关的基因,并建立了一个诊断模型,验证了其良好的诊断效果。此外,我们还采集了 10 名正常对照组和 10 名高频患者的血液样本进行 RT-qPCR 分析,以验证生物信息。我们还发现了两种衰老相关亚型,其免疫浸润和代谢微环境截然不同。研究中进一步进行的单细胞测序分析确定了 SERPINE1 是高频的一个关键基因。研究揭示了SERPINE1成纤维细胞的独特作用,包括三个主要发现:(I)成纤维细胞在HF中具有更高的SERPINE1比例和表达水平;(II)配体-受体对MDK-LRP1在SERPINE1成纤维细胞与其他类型细胞的高度相互作用中贡献最大;以及(III)SERPINE1成纤维细胞与细胞外基质和受体的相互作用有关,并可能受转录因子EGR1的调控。总之,本研究强调了衰老相关基因在诊断高频和调节免疫浸润方面的重要性。我们还发现了不同的高房颤动亚型和一个潜在的关键基因,这可能有助于更好地理解与衰老相关的高房颤动的分子水平机制,并帮助制定有效的治疗策略。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Identification and exploration of aging-related subtypes and distinctive role of SERPINE1 in heart failure based on single-cell and bulk RNA sequencing data

Identification and exploration of aging-related subtypes and distinctive role of SERPINE1 in heart failure based on single-cell and bulk RNA sequencing data

Aging is a major risk factor for heart failure (HF) and is the leading cause of death worldwide. Currently, the nature of the relationship between aging and HF is not entirely clear. Herein, this study aimed to explore new diagnostic biomarkers, molecular typing and therapeutic strategies for HF by investigating the biological significance of aging-related genes in HF. A total of 157 differentially expressed genes (DEGs) were screened totally between HF and normal samples, and functional enrichment analysis of DEGs revealed the strong association of HF progression with aging, immune processes and metabolism. Six HF-specific aging-related genes were further identified, and a diagnostic model was developed and validated for good diagnostic efficacy. In addition, we collected blood samples from 10 normal controls and 10 HF patients for RT-qPCR analysis to verify the bioinformation. We also identified two aging-associated subtypes with distinctly different immune infiltration and metabolic microenvironment. Further single-cell sequencing analysis conducted in the study identified SERPINE1 as a key gene in HF. The distinctive role of SERPINE1 fibroblasts was revealed, including three main findings: (I) fibroblasts had a higher proportion and expression of SERPINE1 levels in HF; (II) the ligand–receptor pair MDK-LRP1 made the most contributions in high interactions with other cell types in SERPINE1 fibroblasts; and (III) SERPINE1 fibroblasts were associated with the interaction of extracellular matrix and receptor and may be regulated by the transcription factor EGR1. In conclusion, this study highlights the importance of aging-related genes in diagnosing HF and regulating immune infiltration. We also identified different HF subtypes and a potentially crucial gene, which may provide a better understanding of the molecular-level mechanisms of aging-related HF and aid in developing effective therapeutic strategies.

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来源期刊
Journal of Gene Medicine
Journal of Gene Medicine 医学-生物工程与应用微生物
CiteScore
6.40
自引率
0.00%
发文量
80
审稿时长
6-12 weeks
期刊介绍: The aims and scope of The Journal of Gene Medicine include cutting-edge science of gene transfer and its applications in gene and cell therapy, genome editing with precision nucleases, epigenetic modifications of host genome by small molecules, siRNA, microRNA and other noncoding RNAs as therapeutic gene-modulating agents or targets, biomarkers for precision medicine, and gene-based prognostic/diagnostic studies. Key areas of interest are the design of novel synthetic and viral vectors, novel therapeutic nucleic acids such as mRNA, modified microRNAs and siRNAs, antagomirs, aptamers, antisense and exon-skipping agents, refined genome editing tools using nucleic acid /protein combinations, physically or biologically targeted delivery and gene modulation, ex vivo or in vivo pharmacological studies including animal models, and human clinical trials. Papers presenting research into the mechanisms underlying transfer and action of gene medicines, the application of the new technologies for stem cell modification or nucleic acid based vaccines, the identification of new genetic or epigenetic variations as biomarkers to direct precision medicine, and the preclinical/clinical development of gene/expression signatures indicative of diagnosis or predictive of prognosis are also encouraged.
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