泛癌症基因组数据的多组学积分曲率研究

IF 1.8 4区 计算机科学 Q3 AUTOMATION & CONTROL SYSTEMS
Jiening Zhu, Anh Phong Tran, Joseph O. Deasy, Allen Tannenbaum
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引用次数: 0

摘要

在这项工作中,我们引入了一个新的基于网络曲率的数学框架,从多组学数据中提取重要的癌症亚型。这扩展了我们之前基于分析固定的单组学数据类(例如,CNA,基因表达,甲基化等)的工作。值得注意的是,我们能够证明这种新方法在Kaplan-Meier曲线上为我们提供了几乎所有被考虑的癌症的显著生存差异。此外,我们还研究了奥利维-里奇曲率的方差,以研究它在网络几何分析中的实用性,因为这种曲率有可能捕捉到不同癌症亚型之间微妙的功能变化。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Multi-omic integrated curvature study on pan-cancer genomic data

Multi-omic integrated curvature study on pan-cancer genomic data

In this work, we introduce a new mathematical framework based on network curvature to extract significant cancer subtypes from multi-omics data. This extends our previous work that was based on analyzing a fixed single-omics data class (e.g., CNA, gene expression, methylation, etc.). Notably, we are able to show that this new methodology provided us with significant survival differences on Kaplan–Meier curves across almost every cancer considered. Moreover, the variances in Ollivier–Ricci curvature were explored to investigate its usefulness in network geometry analysis as this curvature has the potential to capture subtle functional changes between various cancer subtypes.

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来源期刊
Mathematics of Control Signals and Systems
Mathematics of Control Signals and Systems 工程技术-工程:电子与电气
CiteScore
2.90
自引率
0.00%
发文量
18
审稿时长
>12 weeks
期刊介绍: Mathematics of Control, Signals, and Systems (MCSS) is an international journal devoted to mathematical control and system theory, including system theoretic aspects of signal processing. Its unique feature is its focus on mathematical system theory; it concentrates on the mathematical theory of systems with inputs and/or outputs and dynamics that are typically described by deterministic or stochastic ordinary or partial differential equations, differential algebraic equations or difference equations. Potential topics include, but are not limited to controllability, observability, and realization theory, stability theory of nonlinear systems, system identification, mathematical aspects of switched, hybrid, networked, and stochastic systems, and system theoretic aspects of optimal control and other controller design techniques. Application oriented papers are welcome if they contain a significant theoretical contribution.
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