Jiening Zhu, Anh Phong Tran, Joseph O. Deasy, Allen Tannenbaum
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Multi-omic integrated curvature study on pan-cancer genomic data
In this work, we introduce a new mathematical framework based on network curvature to extract significant cancer subtypes from multi-omics data. This extends our previous work that was based on analyzing a fixed single-omics data class (e.g., CNA, gene expression, methylation, etc.). Notably, we are able to show that this new methodology provided us with significant survival differences on Kaplan–Meier curves across almost every cancer considered. Moreover, the variances in Ollivier–Ricci curvature were explored to investigate its usefulness in network geometry analysis as this curvature has the potential to capture subtle functional changes between various cancer subtypes.
期刊介绍:
Mathematics of Control, Signals, and Systems (MCSS) is an international journal devoted to mathematical control and system theory, including system theoretic aspects of signal processing.
Its unique feature is its focus on mathematical system theory; it concentrates on the mathematical theory of systems with inputs and/or outputs and dynamics that are typically described by deterministic or stochastic ordinary or partial differential equations, differential algebraic equations or difference equations.
Potential topics include, but are not limited to controllability, observability, and realization theory, stability theory of nonlinear systems, system identification, mathematical aspects of switched, hybrid, networked, and stochastic systems, and system theoretic aspects of optimal control and other controller design techniques. Application oriented papers are welcome if they contain a significant theoretical contribution.