{"title":"拥挤环境下的货物运输建模:机动关联对货物的影响","authors":"Sutapa Mukherji, Dhruvi K. Patel","doi":"arxiv-2307.00778","DOIUrl":null,"url":null,"abstract":"In intracellular transports, motor proteins transport macromolecules as\ncargos to desired locations by moving on biopolymers such as microtubules.\nRecent experiments suggest that cargos that can associate motor proteins during\ntheir translocation have larger run-length, association time and can overcome\nthe motor traffic on microtubule tracks. Here, we model the dynamics of a cargo\nthat can associate at the most m free motors present on the track as obstacles\nto its motion. The proposed models display competing effects of association and\ncrowding, leading to a peak in the run-length with the free motor density. This\nresult is consistent with past experimental observations. For m=2 and 3, we\nshow that this feature is governed by the largest eigenvalue of the transition\nmatrix describing the cargo dynamics. In all the above cases, free motors are\nassumed to be present as stalled obstacles. We finally compare simulation\nresults for the run-length for general scenarios where the free motors undergo\nprocessive motion in addition to binding and unbinding to or from the\nmicrotubule.","PeriodicalId":501170,"journal":{"name":"arXiv - QuanBio - Subcellular Processes","volume":"52 15","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-07-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Modelling cargo transport in crowded environments: effect of motor association to cargos\",\"authors\":\"Sutapa Mukherji, Dhruvi K. Patel\",\"doi\":\"arxiv-2307.00778\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"In intracellular transports, motor proteins transport macromolecules as\\ncargos to desired locations by moving on biopolymers such as microtubules.\\nRecent experiments suggest that cargos that can associate motor proteins during\\ntheir translocation have larger run-length, association time and can overcome\\nthe motor traffic on microtubule tracks. Here, we model the dynamics of a cargo\\nthat can associate at the most m free motors present on the track as obstacles\\nto its motion. The proposed models display competing effects of association and\\ncrowding, leading to a peak in the run-length with the free motor density. This\\nresult is consistent with past experimental observations. For m=2 and 3, we\\nshow that this feature is governed by the largest eigenvalue of the transition\\nmatrix describing the cargo dynamics. In all the above cases, free motors are\\nassumed to be present as stalled obstacles. We finally compare simulation\\nresults for the run-length for general scenarios where the free motors undergo\\nprocessive motion in addition to binding and unbinding to or from the\\nmicrotubule.\",\"PeriodicalId\":501170,\"journal\":{\"name\":\"arXiv - QuanBio - Subcellular Processes\",\"volume\":\"52 15\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-07-03\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Subcellular Processes\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2307.00778\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Subcellular Processes","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2307.00778","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Modelling cargo transport in crowded environments: effect of motor association to cargos
In intracellular transports, motor proteins transport macromolecules as
cargos to desired locations by moving on biopolymers such as microtubules.
Recent experiments suggest that cargos that can associate motor proteins during
their translocation have larger run-length, association time and can overcome
the motor traffic on microtubule tracks. Here, we model the dynamics of a cargo
that can associate at the most m free motors present on the track as obstacles
to its motion. The proposed models display competing effects of association and
crowding, leading to a peak in the run-length with the free motor density. This
result is consistent with past experimental observations. For m=2 and 3, we
show that this feature is governed by the largest eigenvalue of the transition
matrix describing the cargo dynamics. In all the above cases, free motors are
assumed to be present as stalled obstacles. We finally compare simulation
results for the run-length for general scenarios where the free motors undergo
processive motion in addition to binding and unbinding to or from the
microtubule.