Carlos M. Duque, Douglas M. Hall, Botond Tyukodi, Michael F. Hagan, Christian D. Santangelo, Gregory M. Grason
{"title":"尺寸控制三周期多面体可编程装配的经济性和保真度极限","authors":"Carlos M. Duque, Douglas M. Hall, Botond Tyukodi, Michael F. Hagan, Christian D. Santangelo, Gregory M. Grason","doi":"arxiv-2309.04632","DOIUrl":null,"url":null,"abstract":"We propose and investigate an extension of the Caspar-Klug symmetry\nprinciples for viral capsid assembly to the programmable assembly of\nsize-controlled triply-periodic polyhedra, discrete variants of the Primitive,\nDiamond, and Gyroid cubic minimal surfaces. Inspired by a recent class of\nprogrammable DNA origami colloids, we demonstrate that the economy of design in\nthese crystalline assemblies -- in terms of the growth of the number of\ndistinct particle species required with the increased size-scale (e.g.\nperiodicity) -- is comparable to viral shells. We further test the role of\ngeometric specificity in these assemblies via dynamical assembly simulations,\nwhich show that conditions for simultaneously efficient and high-fidelity\nassembly require an intermediate degree of flexibility of local angles and\nlengths in programmed assembly. Off-target misassembly occurs via incorporation\nof a variant of disclination defects, generalized to the case of hyperbolic\ncrystals. The possibility of these topological defects is a direct consequence\nof the very same symmetry principles that underlie the economical design,\nexposing a basic tradeoff between design economy and fidelity of programmable,\nsize controlled assembly.","PeriodicalId":501170,"journal":{"name":"arXiv - QuanBio - Subcellular Processes","volume":"58 33","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-09-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Limits of economy and fidelity for programmable assembly of size-controlled triply-periodic polyhedra\",\"authors\":\"Carlos M. Duque, Douglas M. Hall, Botond Tyukodi, Michael F. Hagan, Christian D. Santangelo, Gregory M. Grason\",\"doi\":\"arxiv-2309.04632\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"We propose and investigate an extension of the Caspar-Klug symmetry\\nprinciples for viral capsid assembly to the programmable assembly of\\nsize-controlled triply-periodic polyhedra, discrete variants of the Primitive,\\nDiamond, and Gyroid cubic minimal surfaces. Inspired by a recent class of\\nprogrammable DNA origami colloids, we demonstrate that the economy of design in\\nthese crystalline assemblies -- in terms of the growth of the number of\\ndistinct particle species required with the increased size-scale (e.g.\\nperiodicity) -- is comparable to viral shells. We further test the role of\\ngeometric specificity in these assemblies via dynamical assembly simulations,\\nwhich show that conditions for simultaneously efficient and high-fidelity\\nassembly require an intermediate degree of flexibility of local angles and\\nlengths in programmed assembly. Off-target misassembly occurs via incorporation\\nof a variant of disclination defects, generalized to the case of hyperbolic\\ncrystals. The possibility of these topological defects is a direct consequence\\nof the very same symmetry principles that underlie the economical design,\\nexposing a basic tradeoff between design economy and fidelity of programmable,\\nsize controlled assembly.\",\"PeriodicalId\":501170,\"journal\":{\"name\":\"arXiv - QuanBio - Subcellular Processes\",\"volume\":\"58 33\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-09-08\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Subcellular Processes\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2309.04632\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Subcellular Processes","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2309.04632","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Limits of economy and fidelity for programmable assembly of size-controlled triply-periodic polyhedra
We propose and investigate an extension of the Caspar-Klug symmetry
principles for viral capsid assembly to the programmable assembly of
size-controlled triply-periodic polyhedra, discrete variants of the Primitive,
Diamond, and Gyroid cubic minimal surfaces. Inspired by a recent class of
programmable DNA origami colloids, we demonstrate that the economy of design in
these crystalline assemblies -- in terms of the growth of the number of
distinct particle species required with the increased size-scale (e.g.
periodicity) -- is comparable to viral shells. We further test the role of
geometric specificity in these assemblies via dynamical assembly simulations,
which show that conditions for simultaneously efficient and high-fidelity
assembly require an intermediate degree of flexibility of local angles and
lengths in programmed assembly. Off-target misassembly occurs via incorporation
of a variant of disclination defects, generalized to the case of hyperbolic
crystals. The possibility of these topological defects is a direct consequence
of the very same symmetry principles that underlie the economical design,
exposing a basic tradeoff between design economy and fidelity of programmable,
size controlled assembly.