{"title":"非平衡簇-锚点存在时的簇聚集","authors":"Renaud Baillou, Jonas Ranft","doi":"arxiv-2308.15162","DOIUrl":null,"url":null,"abstract":"Non-equilibrium cluster-cluster aggregation of particles diffusing in or at\nthe cell membrane has been hypothesized to lead to domains of finite size in\ndifferent biological contexts such as lipid rafts, cell adhesion complexes, or\npostsynaptic domains in neurons. In this scenario, the desorption of particles\nbalances a continuous flux to the membrane, imposing a cut-off on possible\naggregate sizes and giving rise to a stationary size distribution. Here, we\ninvestigate the case of non-equilibrium cluster-cluster aggregation in two\ndimensions where diffusing particles and/or clusters remain fixed in space at\nspecific anchoring sites, which should be particularly relevant for synapses\nbut may also be present in other biological or physical systems. Using an\neffective mean-field description of the concentration field around anchored\nclusters, we derive an expression for their average size as a function of\nparameters such as the anchoring site density. We furthermore propose and solve\nappropriate rate equations that allow us to predict the size distributions of\nboth diffusing and fixed clusters. We confirm our results with particle-based\nsimulations, and discuss potential implications for biological and physical\nsystems.","PeriodicalId":501170,"journal":{"name":"arXiv - QuanBio - Subcellular Processes","volume":"58 43","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2023-08-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Non-equilibrium cluster-cluster aggregation in the presence of anchoring sites\",\"authors\":\"Renaud Baillou, Jonas Ranft\",\"doi\":\"arxiv-2308.15162\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Non-equilibrium cluster-cluster aggregation of particles diffusing in or at\\nthe cell membrane has been hypothesized to lead to domains of finite size in\\ndifferent biological contexts such as lipid rafts, cell adhesion complexes, or\\npostsynaptic domains in neurons. In this scenario, the desorption of particles\\nbalances a continuous flux to the membrane, imposing a cut-off on possible\\naggregate sizes and giving rise to a stationary size distribution. Here, we\\ninvestigate the case of non-equilibrium cluster-cluster aggregation in two\\ndimensions where diffusing particles and/or clusters remain fixed in space at\\nspecific anchoring sites, which should be particularly relevant for synapses\\nbut may also be present in other biological or physical systems. Using an\\neffective mean-field description of the concentration field around anchored\\nclusters, we derive an expression for their average size as a function of\\nparameters such as the anchoring site density. We furthermore propose and solve\\nappropriate rate equations that allow us to predict the size distributions of\\nboth diffusing and fixed clusters. We confirm our results with particle-based\\nsimulations, and discuss potential implications for biological and physical\\nsystems.\",\"PeriodicalId\":501170,\"journal\":{\"name\":\"arXiv - QuanBio - Subcellular Processes\",\"volume\":\"58 43\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-08-29\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - QuanBio - Subcellular Processes\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2308.15162\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - QuanBio - Subcellular Processes","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2308.15162","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Non-equilibrium cluster-cluster aggregation in the presence of anchoring sites
Non-equilibrium cluster-cluster aggregation of particles diffusing in or at
the cell membrane has been hypothesized to lead to domains of finite size in
different biological contexts such as lipid rafts, cell adhesion complexes, or
postsynaptic domains in neurons. In this scenario, the desorption of particles
balances a continuous flux to the membrane, imposing a cut-off on possible
aggregate sizes and giving rise to a stationary size distribution. Here, we
investigate the case of non-equilibrium cluster-cluster aggregation in two
dimensions where diffusing particles and/or clusters remain fixed in space at
specific anchoring sites, which should be particularly relevant for synapses
but may also be present in other biological or physical systems. Using an
effective mean-field description of the concentration field around anchored
clusters, we derive an expression for their average size as a function of
parameters such as the anchoring site density. We furthermore propose and solve
appropriate rate equations that allow us to predict the size distributions of
both diffusing and fixed clusters. We confirm our results with particle-based
simulations, and discuss potential implications for biological and physical
systems.