从现代旧金山河口四种冶炼厂(冶炼厂科)的全线粒体基因组推断其系统发育关系和引进历史

IF 1.2 3区生物学 Q2 ZOOLOGY

Zoologischer Anzeiger Pub Date : 2023-12-04 DOI:10.1016/j.jcz.2023.11.008

Marzieh Asadi Aghbolaghi , Aaron P. Maloy , Jason A. Coombs , Tien-Chieh Hung , Evan W. Carson

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引用次数: 0

摘要

我们公布了旧金山河口(SFE)四种熔体(熔体科)的完整有丝分裂基因组:特有的跨太平洋熔体(Hypomesus transpacificus)，本地的H. pretiosus和Spirinchus thaleichthys，以及非本地的H. nipponensis。每个基因组包含13个蛋白质编码基因、2个核糖体RNA和22个转移RNA基因、一个控制区(D-loop)和一个假定的光链复制起点(OL);基因顺序遵循其他雌尾鱼。跨太平洋嗜血杆菌总基因组为16,767碱基对(bp);先人的基因长度为16,672bp;S. thaleichthys为16,811bp;日本人为16779 bp。气相色谱含量在47.8% ~ 49.4%之间。有丝分裂基因组的系统发育分析表明，跨太平洋猿人序列属于前猿人[俄勒冈+ SFE]分支，与前猿人[SFE]亲缘关系最密切，而衍生细胞色素b序列的亲和力支持SFE日本猿人的苏湖起源。

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Phylogenetic relationships and introduction history inferred from complete mitochondrial genomes of four smelts (Osmeridae) of the modern San Francisco Estuary

We announce complete mitogenomes of four smelts (Osmeridae) of the San Francisco Estuary (SFE): endemic Hypomesus transpacificus, native H. pretiosus and Spirinchus thaleichthys, and non-native H. nipponensis. The genomes each contained 13 protein coding, 2 ribosomal RNA and 22 transfer RNA genes, a control region (D-loop), and a putative origin of replication of the light strand (O_L); gene order followed other osmerids. Total genomes were 16,767 base-pairs (bp) for H. transpacificus; 16,672bp for H. pretiosus; 16,811bp for S. thaleichthys; and 16,779bp for H. nipponensis. GC content was from 47.8% (S. thaleichthys) to 49.4% (H. pretiosus). Phylogenetic analyses of mitogenomes placed H. transpacificus sequences within the H. pretiosus [Oregon + SFE] clade and most closely related to H. pretiosus [SFE], whereas affinities of derivative cytochrome b sequences supported a Lake Suwa origin for SFE H. nipponensis.

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来源期刊

Zoologischer Anzeiger 生物-动物学

CiteScore

2.80

自引率

7.10%

发文量

审稿时长

>12 weeks

期刊介绍： Zoologischer Anzeiger - A Journal of Comparative Zoology is devoted to comparative zoology with a special emphasis on morphology, systematics, biogeography, and evolutionary biology targeting all metazoans, both modern and extinct. We also consider taxonomic submissions addressing a broader systematic and/or evolutionary context. The overall aim of the journal is to contribute to our understanding of the organismic world from an evolutionary perspective. The journal Zoologischer Anzeiger invites suggestions for special issues. Interested parties may contact one of the editors.