Cecilia Alonso, Emiliano Pereira, Florencia Bertoglio, Miquel De Cáceres, Rudolf Amann
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Here, as a proof of principle, we analysed the bacterioplankton community composition of 4 estuaries in North and South America, Europe, and Asia, and looked for indicators of groups of samples defined using partition techniques, according to primary physicochemical variables typically monitored to infer water quality. Indicator value analysis (<i>IndVal</i>) was conducted to identify indicator operational taxonomic units (OTUs; analogous to species in other fields of ecology) in each group. These bacterioplankton-based indicators exhibited a high capacity to predict the group membership of the samples within each estuary and to correctly assign the samples to the appropriate estuary in a combined data set, employing different machine learning techniques. The indicators were composed of OTUs belonging to several bacterial phyla, which responded significantly and differentially to the environmental variables used to define the groups of samples. Moreover, the predictive values of these bacterial indicators were generally higher than those of other biological assemblages commonly used for environmental monitoring. Therefore, this approach appears to be a promising tool to complement existing strategies for monitoring and conservation of aquatic systems worldwide.","PeriodicalId":8112,"journal":{"name":"Aquatic Microbial Ecology","volume":"125 s1","pages":""},"PeriodicalIF":1.6000,"publicationDate":"2022-01-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Bacterioplankton composition as an indicator of environmental status: proof of principle using indicator value analysis of estuarine communities\",\"authors\":\"Cecilia Alonso, Emiliano Pereira, Florencia Bertoglio, Miquel De Cáceres, Rudolf Amann\",\"doi\":\"10.3354/ame01979\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"ABSTRACT: Increasing awareness of environmental impacts caused by anthropogenic activities highlights the need to determine indicators of environmental status that can be routinely assessed at large spatial and temporal scales. Microbial communities comprise the greatest share of biological diversity on Earth and can rapidly reflect recent environmental changes while providing a record of past events. However, they have rarely been targeted in the search for ecological indicators of habitat types, environmental conditions, or environmental changes. Here, as a proof of principle, we analysed the bacterioplankton community composition of 4 estuaries in North and South America, Europe, and Asia, and looked for indicators of groups of samples defined using partition techniques, according to primary physicochemical variables typically monitored to infer water quality. Indicator value analysis (<i>IndVal</i>) was conducted to identify indicator operational taxonomic units (OTUs; analogous to species in other fields of ecology) in each group. These bacterioplankton-based indicators exhibited a high capacity to predict the group membership of the samples within each estuary and to correctly assign the samples to the appropriate estuary in a combined data set, employing different machine learning techniques. The indicators were composed of OTUs belonging to several bacterial phyla, which responded significantly and differentially to the environmental variables used to define the groups of samples. Moreover, the predictive values of these bacterial indicators were generally higher than those of other biological assemblages commonly used for environmental monitoring. 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Bacterioplankton composition as an indicator of environmental status: proof of principle using indicator value analysis of estuarine communities
ABSTRACT: Increasing awareness of environmental impacts caused by anthropogenic activities highlights the need to determine indicators of environmental status that can be routinely assessed at large spatial and temporal scales. Microbial communities comprise the greatest share of biological diversity on Earth and can rapidly reflect recent environmental changes while providing a record of past events. However, they have rarely been targeted in the search for ecological indicators of habitat types, environmental conditions, or environmental changes. Here, as a proof of principle, we analysed the bacterioplankton community composition of 4 estuaries in North and South America, Europe, and Asia, and looked for indicators of groups of samples defined using partition techniques, according to primary physicochemical variables typically monitored to infer water quality. Indicator value analysis (IndVal) was conducted to identify indicator operational taxonomic units (OTUs; analogous to species in other fields of ecology) in each group. These bacterioplankton-based indicators exhibited a high capacity to predict the group membership of the samples within each estuary and to correctly assign the samples to the appropriate estuary in a combined data set, employing different machine learning techniques. The indicators were composed of OTUs belonging to several bacterial phyla, which responded significantly and differentially to the environmental variables used to define the groups of samples. Moreover, the predictive values of these bacterial indicators were generally higher than those of other biological assemblages commonly used for environmental monitoring. Therefore, this approach appears to be a promising tool to complement existing strategies for monitoring and conservation of aquatic systems worldwide.
期刊介绍:
AME is international and interdisciplinary. It presents rigorously refereed and carefully selected Research Articles, Reviews and Notes, as well as Comments/Reply Comments (for details see AME 27:209), Opinion Pieces (previously called ''As I See It'') and AME Specials. For details consult the Guidelines for Authors. Papers may be concerned with:
Tolerances and responses of microorganisms to variations in abiotic and biotic components of their environment; microbial life under extreme environmental conditions (climate, temperature, pressure, osmolarity, redox, etc.).
Role of aquatic microorganisms in the production, transformation and decomposition of organic matter; flow patterns of energy and matter as these pass through microorganisms; population dynamics; trophic interrelationships; modelling, both theoretical and via computer simulation, of individual microorganisms and microbial populations; biodiversity.
Absorption and transformation of inorganic material; synthesis and transformation of organic material (autotrophic and heterotrophic); non-genetic and genetic adaptation; behaviour; molecular microbial ecology; symbioses.