Effects of tidal cycles on the variability of microbial communities in a semiclosed bay

Shallow sediment-water plays an important role in transforming organic matter in estuaries. As a shallow bay often flanks a large estuary, the estuarine water enters the shallow bay during flood tides and exits during ebb tides. The inundation between flood and ebb tides in the shallow bay serves as an incubation of the bay water and sediment. However, little is known about the effects of tidal cycles on microbial diversity and biogeochemical processes. In Tangjiawan Bay, which is a small bay located on the west side of the Pearl River estuary, we examined changes in microbial diversity and environmental factors by collecting surface water samples between floods and ebbs. Using high-throughput sequencing targeting 16S and 18S rRNA genes, the results indicated that between floods and ebbs, the community composition of bacteria and eukaryotes differed significantly, the alpha diversity of bacteria and eukaryotes differed significantly, with floods harboring higher diversity. The analysis of RDA suggested that salinity and TOC were important in explaining community variation in both bacteria and eukaryotes. Moreover, the co-occurrence networks between bacteria and eukaryotes showed higher negative relationships in ebbs (83.87%) than in floods (64.29%), suggesting increased interactions between bacteria and eukaryotes during ebbs as the water was incubated in the bay. These findings demonstrated the dynamics of biogeochemical processes of nutrients and plankton communities in the shallow bay and tidal cycles are a dominant driving force in regulating variability in phytoplankton and bacterial community and the sediment-water interface exchange. The results indicate that we should not overlook at the importance of shallow water column fringing the shore lines.