{"title":"自复制囊泡模型系统中子囊泡的易位","authors":"Klawtanong, Manit, Sakuma, Yuka, Imai, Masayuki, Kawakatsu, Toshihiro, Khunpetch, Petch","doi":"10.48550/arxiv.2311.07401","DOIUrl":null,"url":null,"abstract":"Translocation of a daughter vesicle from a mother vesicle through a pore is experimentally studied by many groups using a model system of self-reproducing vesicles. However, the theoretical formulation of the problem is not fully understood. In the present study, we present a theoretical formulation of the process based on our previous work [P. Khunpetch et al., Phys. Fluids 33, 077103 (2021)]. In our previous work, we considered the daughter vesicle as a rigid body. In the present work, however, we allow the daughter vesicle to deform during the expulsion process. We thus derive the free energy constituting of the elastic moduli of both the mother and daughter vesicles, and of pressure-driven contribution. The minimum energy path of the translocation is searched by using the string method. Our improved model successfully suggests the disappearance of the energy barrier where all the elastic moduli are in agreement with the experimental reports, while the previous work is unsuccessful to do so. The equations of motion of the daughter vesicle have been derived within the framework of the Onsager principle. We found that the translocation time of the daughter vesicle can be reduced when the pressure inside the mother vesicle increases, or the initial size of the daughter vesicle decreases.","PeriodicalId":496270,"journal":{"name":"arXiv (Cornell University)","volume":"111 24","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2023-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Translocation of a daughter vesicle in a model system of\\n self-reproducing vesicles\",\"authors\":\"Klawtanong, Manit, Sakuma, Yuka, Imai, Masayuki, Kawakatsu, Toshihiro, Khunpetch, Petch\",\"doi\":\"10.48550/arxiv.2311.07401\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Translocation of a daughter vesicle from a mother vesicle through a pore is experimentally studied by many groups using a model system of self-reproducing vesicles. However, the theoretical formulation of the problem is not fully understood. In the present study, we present a theoretical formulation of the process based on our previous work [P. Khunpetch et al., Phys. Fluids 33, 077103 (2021)]. In our previous work, we considered the daughter vesicle as a rigid body. In the present work, however, we allow the daughter vesicle to deform during the expulsion process. We thus derive the free energy constituting of the elastic moduli of both the mother and daughter vesicles, and of pressure-driven contribution. The minimum energy path of the translocation is searched by using the string method. Our improved model successfully suggests the disappearance of the energy barrier where all the elastic moduli are in agreement with the experimental reports, while the previous work is unsuccessful to do so. The equations of motion of the daughter vesicle have been derived within the framework of the Onsager principle. We found that the translocation time of the daughter vesicle can be reduced when the pressure inside the mother vesicle increases, or the initial size of the daughter vesicle decreases.\",\"PeriodicalId\":496270,\"journal\":{\"name\":\"arXiv (Cornell University)\",\"volume\":\"111 24\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2023-11-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv (Cornell University)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.48550/arxiv.2311.07401\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv (Cornell University)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.48550/arxiv.2311.07401","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
许多研究小组利用自复制囊泡模型系统实验研究了母囊泡的子囊泡通过孔的易位。然而,这个问题的理论表述还没有被完全理解。在本研究中,我们提出了一个理论公式的过程基于我们以前的工作[P。Khunpetch et al.,物理学。中国生物医学工程学报,2016,33(5):387 - 387。在我们以前的工作中,我们认为子囊泡是刚体。然而,在目前的工作中,我们允许子囊泡在排出过程中变形。因此,我们推导出由母泡和子泡的弹性模量以及压力驱动的贡献组成的自由能。用字符串法搜索易位的最小能量路径。我们的改进模型成功地表明了所有弹性模量与实验报告一致的能量势垒的消失,而以前的工作没有成功。在昂萨格原理的框架内推导了子囊泡的运动方程。我们发现,当母囊泡内压力增大或子囊泡初始尺寸减小时,子囊泡的易位时间可以缩短。
Translocation of a daughter vesicle in a model system of
self-reproducing vesicles
Translocation of a daughter vesicle from a mother vesicle through a pore is experimentally studied by many groups using a model system of self-reproducing vesicles. However, the theoretical formulation of the problem is not fully understood. In the present study, we present a theoretical formulation of the process based on our previous work [P. Khunpetch et al., Phys. Fluids 33, 077103 (2021)]. In our previous work, we considered the daughter vesicle as a rigid body. In the present work, however, we allow the daughter vesicle to deform during the expulsion process. We thus derive the free energy constituting of the elastic moduli of both the mother and daughter vesicles, and of pressure-driven contribution. The minimum energy path of the translocation is searched by using the string method. Our improved model successfully suggests the disappearance of the energy barrier where all the elastic moduli are in agreement with the experimental reports, while the previous work is unsuccessful to do so. The equations of motion of the daughter vesicle have been derived within the framework of the Onsager principle. We found that the translocation time of the daughter vesicle can be reduced when the pressure inside the mother vesicle increases, or the initial size of the daughter vesicle decreases.