斑马鱼幼体的全自动触摸反应行为检测管道

IF 0.7 4区计算机科学 Q4 AUTOMATION & CONTROL SYSTEMS

At-Automatisierungstechnik Pub Date : 2023-10-01 DOI:10.1515/auto-2023-0013

Yanke Wang, Christian Pylatiuk, Ralf Mikut, Ravindra Peravali, Markus Reischl

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引用次数: 0

摘要

斑马鱼幼体的触摸诱发反应为该基因功能表达的机制提供了信息。最近，一种自动化系统已经开发出精确和重复的触摸反应实验，只需少量的人为干预。为了量化收集到的数据，我们提出了一个基于幼虫跟踪和分割的全自动多幼虫触摸反应行为检测管道。利用所提出的检测平台对不同处理的实验数据进行了分析论证，结果证明该平台能够高效、自动地生成可比较的触摸响应行为检测读数。初步结果发表于1931年。计算智能研讨会，并总结和扩展了各自文章的主要工作。

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A fully automated touch-response behavior inspection pipeline on zebrafish larvae

Abstract A touch-evoked response of zebrafish larvae provides information on the mechanism of the gene functional expressions. Recently, an automated system has been developed for precise and repeated touch-response experimentation with minor human intervention. To quantify the collected data, we propose a fully automated multi-larvae touch-response behavior inspection pipeline based on larva tracking and segmentation. Experimental data with different treatments is analyzed by using the proposed inspection platform for demonstration, and the result proves that this platform can generate comparable touch-response behavior inspection readouts efficiently and automatically. The initial results were published in 31. Workshop Computational Intelligence, and this paper summarizes and extends the main work of the respective article.

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来源期刊

At-Automatisierungstechnik 工程技术-自动化与控制系统

CiteScore

2.00

自引率

10.00%

发文量

审稿时长

6-12 weeks

期刊介绍： Automatisierungstechnik (AUTO) publishes articles covering the entire range of automation technology: development and application of methods, the operating principles, characteristics, and applications of tools and the interrelationships between automation technology and societal developments. The journal includes a tutorial series on "Theory for Users," and a forum for the exchange of viewpoints concerning past, present, and future developments. Automatisierungstechnik is the official organ of GMA (The VDI/VDE Society for Measurement and Automatic Control) and NAMUR (The Process-Industry Interest Group for Automation Technology). Topics control engineering digital measurement systems cybernetics robotics process automation / process engineering control design modelling information processing man-machine interfaces networked control systems complexity management machine learning ambient assisted living automated driving bio-analysis technology building automation factory automation / smart factories flexible manufacturing systems functional safety mechatronic systems.