从历史探险日记到全基因组测序:可能灭绝的红海鱼雷射线的案例研究

IF 4.6 Q2 MATERIALS SCIENCE, BIOMATERIALS
Anja Palandačić, Martin Kapun, Carola Greve, Tilman Schell, Sandra Kirchner, Luise Kruckenhauser, Nikolaus Szucsich, Nina Bogutskaya
{"title":"从历史探险日记到全基因组测序:可能灭绝的红海鱼雷射线的案例研究","authors":"Anja Palandačić, Martin Kapun, Carola Greve, Tilman Schell, Sandra Kirchner, Luise Kruckenhauser, Nikolaus Szucsich, Nina Bogutskaya","doi":"10.1111/zsc.12632","DOIUrl":null,"url":null,"abstract":"Abstract Torpedo rays (Torpedinidae, Torpediniformes) are small to moderately large batoids that produce an electric discharge. They are distributed worldwide in temperate and tropical seas and are, as a result of their bottom‐dwelling behaviour, susceptible to trawl fishing and often end up as victims of bycatch. The distribution ranges of most recognized species seem to be restricted; however, their species‐level systematics is not adequately resolved. In the genus Torpedo , in which many species require revision, there are possibly several undescribed species, while numerous misidentifications add to the complexity of the issue. In the latest lists of living rays, 13 species are accepted in the genus Torpedo , including three of doubtful validity and several recently discovered undescribed species. Among the valid species is the critically endangered, possibly extinct, Torpedo suessii Steindachner, 1898, the Red Sea torpedo, of which only four specimens have been recorded in the literature until now, three of which still exist in the fish collection of the Natural History Museum of Vienna. Museum collections are the most important archive of biodiversity on Earth, and are increasingly being used for various studies, including phylogenetics, population genomics, and biogeography. Nevertheless, molecular analysis of old museum material remains challenging because the genetic material has degraded, is fragmented, and of low quantity. In molecular taxonomy, the necessity of including type specimens as name‐bearing specimens is increasingly recognized. Here, the extended specimen approach was applied to re‐describe the lectotype of T. suessii . The approach included research of historical information and whole genome sequencing, followed by genome assembly and phylogenetic analysis.","PeriodicalId":2,"journal":{"name":"ACS Applied Bio Materials","volume":null,"pages":null},"PeriodicalIF":4.6000,"publicationDate":"2023-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"From historical expedition diaries to whole genome sequencing: A case study of the likely extinct Red Sea torpedo ray\",\"authors\":\"Anja Palandačić, Martin Kapun, Carola Greve, Tilman Schell, Sandra Kirchner, Luise Kruckenhauser, Nikolaus Szucsich, Nina Bogutskaya\",\"doi\":\"10.1111/zsc.12632\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Abstract Torpedo rays (Torpedinidae, Torpediniformes) are small to moderately large batoids that produce an electric discharge. They are distributed worldwide in temperate and tropical seas and are, as a result of their bottom‐dwelling behaviour, susceptible to trawl fishing and often end up as victims of bycatch. The distribution ranges of most recognized species seem to be restricted; however, their species‐level systematics is not adequately resolved. In the genus Torpedo , in which many species require revision, there are possibly several undescribed species, while numerous misidentifications add to the complexity of the issue. In the latest lists of living rays, 13 species are accepted in the genus Torpedo , including three of doubtful validity and several recently discovered undescribed species. Among the valid species is the critically endangered, possibly extinct, Torpedo suessii Steindachner, 1898, the Red Sea torpedo, of which only four specimens have been recorded in the literature until now, three of which still exist in the fish collection of the Natural History Museum of Vienna. Museum collections are the most important archive of biodiversity on Earth, and are increasingly being used for various studies, including phylogenetics, population genomics, and biogeography. Nevertheless, molecular analysis of old museum material remains challenging because the genetic material has degraded, is fragmented, and of low quantity. In molecular taxonomy, the necessity of including type specimens as name‐bearing specimens is increasingly recognized. Here, the extended specimen approach was applied to re‐describe the lectotype of T. suessii . The approach included research of historical information and whole genome sequencing, followed by genome assembly and phylogenetic analysis.\",\"PeriodicalId\":2,\"journal\":{\"name\":\"ACS Applied Bio Materials\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.6000,\"publicationDate\":\"2023-09-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Applied Bio Materials\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1111/zsc.12632\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"MATERIALS SCIENCE, BIOMATERIALS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Applied Bio Materials","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1111/zsc.12632","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"MATERIALS SCIENCE, BIOMATERIALS","Score":null,"Total":0}
引用次数: 0

摘要

摘要鱼雷射线(鱼雷科,鱼雷形)是一种小到中等大小的能产生放电的类蝙蝠。它们分布在世界各地的温带和热带海洋中,由于它们生活在海底,容易受到拖网捕捞的影响,最终往往成为副渔获物的受害者。大多数已知物种的分布范围似乎是有限的;然而,它们在物种水平上的系统分类尚未得到充分解决。在鱼雷属中,其中许多物种需要修订,可能有几个未描述的物种,而许多错误识别增加了问题的复杂性。在现存鳐鱼的最新名单中,有13种被认为是鳐鱼属,其中包括3种有效性存疑的鳐鱼和一些最近发现的未被描述的鳐鱼。在有效的物种中,有一种是极度濒危的,可能已经灭绝的,1898年的鱼雷suessii Steindachner,红海鱼雷,到目前为止,文献中只记录了四个样本,其中三个仍然存在于维也纳自然历史博物馆的鱼类收藏中。博物馆收藏是地球上生物多样性最重要的档案,越来越多地被用于各种研究,包括系统发育学、种群基因组学和生物地理学。然而,对旧博物馆材料的分子分析仍然具有挑战性,因为遗传物质已经退化,碎片化,数量少。在分子分类学中,越来越多的人认识到将模式标本作为命名标本的必要性。在这里,扩展标本方法被应用于重新描述T. suessii的选择型。方法包括历史资料研究和全基因组测序,然后进行基因组组装和系统发育分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
From historical expedition diaries to whole genome sequencing: A case study of the likely extinct Red Sea torpedo ray
Abstract Torpedo rays (Torpedinidae, Torpediniformes) are small to moderately large batoids that produce an electric discharge. They are distributed worldwide in temperate and tropical seas and are, as a result of their bottom‐dwelling behaviour, susceptible to trawl fishing and often end up as victims of bycatch. The distribution ranges of most recognized species seem to be restricted; however, their species‐level systematics is not adequately resolved. In the genus Torpedo , in which many species require revision, there are possibly several undescribed species, while numerous misidentifications add to the complexity of the issue. In the latest lists of living rays, 13 species are accepted in the genus Torpedo , including three of doubtful validity and several recently discovered undescribed species. Among the valid species is the critically endangered, possibly extinct, Torpedo suessii Steindachner, 1898, the Red Sea torpedo, of which only four specimens have been recorded in the literature until now, three of which still exist in the fish collection of the Natural History Museum of Vienna. Museum collections are the most important archive of biodiversity on Earth, and are increasingly being used for various studies, including phylogenetics, population genomics, and biogeography. Nevertheless, molecular analysis of old museum material remains challenging because the genetic material has degraded, is fragmented, and of low quantity. In molecular taxonomy, the necessity of including type specimens as name‐bearing specimens is increasingly recognized. Here, the extended specimen approach was applied to re‐describe the lectotype of T. suessii . The approach included research of historical information and whole genome sequencing, followed by genome assembly and phylogenetic analysis.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
ACS Applied Bio Materials
ACS Applied Bio Materials Chemistry-Chemistry (all)
CiteScore
9.40
自引率
2.10%
发文量
464
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信