clusteranalytics:一个用于评估网络中社区稳定性和重要性的R包

IF 2.3 4区 计算机科学 Q3 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
R Journal Pub Date : 2023-11-01 DOI:10.32614/rj-2023-057
Martí Renedo-Mirambell, Argimiro Arratia
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引用次数: 0

摘要

本文介绍了R包[clusteranalytics](https://CRAN.R-project.org/package=clustAnalytics),它包含一组用于评估任何聚类算法发现的网络中社区的重要性和稳定性的标准。[clusteranalytics](https://CRAN.R-project.org/package=clustAnalytics)与r包[igraph](https://CRAN.R-project.org/package=igraph)中的类[igraph](https://CRAN.R-project.org/package=igraph)的图一起工作,扩展到处理加权和/或有向图。[clusteranalytics](https://CRAN.R-project.org/package=clustAnalytics)提供了一组社区评分功能,以及系统地将它们的值与合适的零模型的值进行比较的方法,这些方法在测试集群显著性时很有用。本文还提出了一种结合信息论和组合学的相似性度量的非参数自举方法,用于测试聚类的稳定性,以及一种基于优先依恋模型构建的综合生成具有真实群落结构的加权网络的方法,从而产生具有群落和无标度分布的网络。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
clustAnalytics: An R Package for Assessing Stability and Significance of Communities in Networks
This paper introduces the R package [clustAnalytics](https://CRAN.R-project.org/package=clustAnalytics), which comprises a set of criteria for assessing the significance and stability of communities in networks found by any clustering algorithm. [clustAnalytics](https://CRAN.R-project.org/package=clustAnalytics) works with graphs of class [igraph](https://CRAN.R-project.org/package=igraph) from the R-package [igraph](https://CRAN.R-project.org/package=igraph), extended to handle weighted and/or directed graphs. [clustAnalytics](https://CRAN.R-project.org/package=clustAnalytics) provides a set of community scoring functions, and methods to systematically compare their values to those of a suitable null model, which are of use when testing for cluster significance. It also provides a non parametric bootstrap method combined with similarity metrics derived from information theory and combinatorics, useful when testing for cluster stability, as well as a method to synthetically generate a weighted network with a ground truth community structure based on the preferential attachment model construction, producing networks with communities and scale-free degree distribution.
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来源期刊
R Journal
R Journal COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS-STATISTICS & PROBABILITY
CiteScore
2.70
自引率
0.00%
发文量
40
审稿时长
>12 weeks
期刊介绍: The R Journal is the open access, refereed journal of the R project for statistical computing. It features short to medium length articles covering topics that should be of interest to users or developers of R. The R Journal intends to reach a wide audience and have a thorough review process. Papers are expected to be reasonably short, clearly written, not too technical, and of course focused on R. Authors of refereed articles should take care to: - put their contribution in context, in particular discuss related R functions or packages; - explain the motivation for their contribution; - provide code examples that are reproducible.
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