Fanyou Wu , Yunmei Huang , Bedrich Benes , Charles C. Warner , Rado Gazo
{"title":"通过深度学习自动检测印第安纳州常见硬木树种的年轮:引入一个新的带注释的图像数据集","authors":"Fanyou Wu , Yunmei Huang , Bedrich Benes , Charles C. Warner , Rado Gazo","doi":"10.1016/j.inpa.2023.10.002","DOIUrl":null,"url":null,"abstract":"<div><div>Tree-ring dating enables gathering necessary knowledge about trees, and it is essential in many areas, including forest management and the timber industry. Tree-ring dating can be conducted on either wood’s clean cross-sections or tree trunks’ rough end cross-sections. However, the measurement process is still time-consuming and frequently requires experts who use special devices, such as stereoscopes. Modern approaches based on image processing using deep learning have been successfully applied in many areas, and they can succeed in recognizing tree rings. While supervised deep learning-based methods often produce excellent results, they also depend on extensive datasets of tediously annotated data. To our knowledge, there are only a few publicly available ring image datasets with annotations. We introduce a new carefully captured dataset of images of hardwood species automatically annotated for tree ring detection. We capture each wood cookie twice, once in the rough form, similar to industrial settings, and then after careful cleaning, that reveals all growth rings. We carefully overlap the images and use them for an automatic ring annotation in the rough data. We then use the Feature Pyramid Network with Resnet encoder that obtains an overall pixel-level area under the curve score of 85.72% and ring level <span><math><msub><mrow><mi>F</mi></mrow><mrow><mn>1</mn></mrow></msub></math></span> score of 0.7348. The data and code are available at <span><span>https://github.com/wufanyou/growth-ring-detection</span><svg><path></path></svg></span>.</div></div>","PeriodicalId":53443,"journal":{"name":"Information Processing in Agriculture","volume":"11 4","pages":"Pages 552-558"},"PeriodicalIF":7.7000,"publicationDate":"2024-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Automated tree ring detection of common Indiana hardwood species through deep learning: Introducing a new dataset of annotated images\",\"authors\":\"Fanyou Wu , Yunmei Huang , Bedrich Benes , Charles C. Warner , Rado Gazo\",\"doi\":\"10.1016/j.inpa.2023.10.002\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><div>Tree-ring dating enables gathering necessary knowledge about trees, and it is essential in many areas, including forest management and the timber industry. Tree-ring dating can be conducted on either wood’s clean cross-sections or tree trunks’ rough end cross-sections. However, the measurement process is still time-consuming and frequently requires experts who use special devices, such as stereoscopes. Modern approaches based on image processing using deep learning have been successfully applied in many areas, and they can succeed in recognizing tree rings. While supervised deep learning-based methods often produce excellent results, they also depend on extensive datasets of tediously annotated data. To our knowledge, there are only a few publicly available ring image datasets with annotations. We introduce a new carefully captured dataset of images of hardwood species automatically annotated for tree ring detection. We capture each wood cookie twice, once in the rough form, similar to industrial settings, and then after careful cleaning, that reveals all growth rings. We carefully overlap the images and use them for an automatic ring annotation in the rough data. We then use the Feature Pyramid Network with Resnet encoder that obtains an overall pixel-level area under the curve score of 85.72% and ring level <span><math><msub><mrow><mi>F</mi></mrow><mrow><mn>1</mn></mrow></msub></math></span> score of 0.7348. The data and code are available at <span><span>https://github.com/wufanyou/growth-ring-detection</span><svg><path></path></svg></span>.</div></div>\",\"PeriodicalId\":53443,\"journal\":{\"name\":\"Information Processing in Agriculture\",\"volume\":\"11 4\",\"pages\":\"Pages 552-558\"},\"PeriodicalIF\":7.7000,\"publicationDate\":\"2024-12-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Information Processing in Agriculture\",\"FirstCategoryId\":\"1091\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2214317323000781\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"AGRICULTURE, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Information Processing in Agriculture","FirstCategoryId":"1091","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2214317323000781","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"AGRICULTURE, MULTIDISCIPLINARY","Score":null,"Total":0}
Automated tree ring detection of common Indiana hardwood species through deep learning: Introducing a new dataset of annotated images
Tree-ring dating enables gathering necessary knowledge about trees, and it is essential in many areas, including forest management and the timber industry. Tree-ring dating can be conducted on either wood’s clean cross-sections or tree trunks’ rough end cross-sections. However, the measurement process is still time-consuming and frequently requires experts who use special devices, such as stereoscopes. Modern approaches based on image processing using deep learning have been successfully applied in many areas, and they can succeed in recognizing tree rings. While supervised deep learning-based methods often produce excellent results, they also depend on extensive datasets of tediously annotated data. To our knowledge, there are only a few publicly available ring image datasets with annotations. We introduce a new carefully captured dataset of images of hardwood species automatically annotated for tree ring detection. We capture each wood cookie twice, once in the rough form, similar to industrial settings, and then after careful cleaning, that reveals all growth rings. We carefully overlap the images and use them for an automatic ring annotation in the rough data. We then use the Feature Pyramid Network with Resnet encoder that obtains an overall pixel-level area under the curve score of 85.72% and ring level score of 0.7348. The data and code are available at https://github.com/wufanyou/growth-ring-detection.
期刊介绍:
Information Processing in Agriculture (IPA) was established in 2013 and it encourages the development towards a science and technology of information processing in agriculture, through the following aims: • Promote the use of knowledge and methods from the information processing technologies in the agriculture; • Illustrate the experiences and publications of the institutes, universities and government, and also the profitable technologies on agriculture; • Provide opportunities and platform for exchanging knowledge, strategies and experiences among the researchers in information processing worldwide; • Promote and encourage interactions among agriculture Scientists, Meteorologists, Biologists (Pathologists/Entomologists) with IT Professionals and other stakeholders to develop and implement methods, techniques, tools, and issues related to information processing technology in agriculture; • Create and promote expert groups for development of agro-meteorological databases, crop and livestock modelling and applications for development of crop performance based decision support system. Topics of interest include, but are not limited to: • Smart Sensor and Wireless Sensor Network • Remote Sensing • Simulation, Optimization, Modeling and Automatic Control • Decision Support Systems, Intelligent Systems and Artificial Intelligence • Computer Vision and Image Processing • Inspection and Traceability for Food Quality • Precision Agriculture and Intelligent Instrument • The Internet of Things and Cloud Computing • Big Data and Data Mining