Joaquín Amigó-Vega, Maarten C Ottenhoff, Maxime Verwoert, Pieter Kubben, Christian Herff
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Therefore, we developed a software package named T-REX (Standalone Recorder of Experiments) that specifically simplifies the recording of experiments while focusing on retaining flexibility. Methods The proposed solution is a standalone webpage that the researcher can provide without an active internet connection. It is built using Bootstrap5 for the frontend and the Python package Flask for the backend. Only Python 3.7+ and a few dependencies are required to start the different experiments. Data synchronization is implemented using Lab Streaming Layer, an open-source networked synchronization ecosystem, enabling all major programming languages and toolboxes to be used for developing and executing the experiments. Additionally, T-REX runs on Windows, Linux, and macOS. Results The system reduces experimental overhead during recordings to a minimum. Multiple experiments are centralized in a simple local web interface that reduces an experiment’s setup, start, and stop to a single button press. In principle, any type of experiment, regardless of the scientific field (eg, behavioral or cognitive sciences, and electrophysiology), can be executed with the platform. T-REX includes an easy-to-use interface that can be adjusted to specific recording modalities, amplifiers, and participants. Because of the automated setup, easy recording, and easy-to-use interface, participants may even start and stop experiments by themselves, thus potentially providing data without the researcher’s presence. Conclusions We developed a new recording platform that is operating system independent, user friendly, and robust. We provide researchers with a solution that can greatly increase the time spent on recording instead of setting up (with its possible errors).","PeriodicalId":73555,"journal":{"name":"JMIR neurotechnology","volume":"13 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2023-10-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"The Easy and Versatile Neural Recording Platform (T-REX): Design and Development Study\",\"authors\":\"Joaquín Amigó-Vega, Maarten C Ottenhoff, Maxime Verwoert, Pieter Kubben, Christian Herff\",\"doi\":\"10.2196/47881\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Background Recording time in invasive neuroscientific research is limited and must be used as efficiently as possible. Time is often lost due to a long setup time and errors by the researcher, driven by the number of manually performed steps. 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Data synchronization is implemented using Lab Streaming Layer, an open-source networked synchronization ecosystem, enabling all major programming languages and toolboxes to be used for developing and executing the experiments. Additionally, T-REX runs on Windows, Linux, and macOS. Results The system reduces experimental overhead during recordings to a minimum. Multiple experiments are centralized in a simple local web interface that reduces an experiment’s setup, start, and stop to a single button press. In principle, any type of experiment, regardless of the scientific field (eg, behavioral or cognitive sciences, and electrophysiology), can be executed with the platform. T-REX includes an easy-to-use interface that can be adjusted to specific recording modalities, amplifiers, and participants. 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引用次数: 0
摘要
背景:在侵入性神经科学研究中,记录时间是有限的,必须尽可能有效地利用。由于手动执行步骤的数量,研究人员的设置时间和错误经常导致时间损失。目前,自动化实验开销的记录解决方案要么是由研究人员定制的,要么是作为综合神经科学工具箱中的子模块提供的,而且没有明确专注于记录的平台。目的尽量减少人工操作的次数,降低错误率和实验开销。但是,自动化应该避免降低系统的灵活性。因此,我们开发了一个名为T-REX (Standalone Recorder of Experiments)的软件包,专门简化实验记录,同时注重保持灵活性。提出的解决方案是一个独立的网页,研究人员可以提供没有一个活跃的互联网连接。它使用Bootstrap5作为前端,使用Python包Flask作为后端。启动不同的实验只需要Python 3.7+和一些依赖项。数据同步使用Lab Streaming Layer实现,这是一个开源的网络同步生态系统,可以使用所有主要的编程语言和工具箱来开发和执行实验。此外,T-REX可以在Windows、Linux和macOS上运行。结果该系统将记录过程中的实验开销降至最低。多个实验集中在一个简单的本地web界面,减少了实验的设置,开始和停止到一个单一的按钮按下。原则上,任何类型的实验,无论科学领域(例如,行为或认知科学,以及电生理学),都可以在平台上执行。T-REX包括一个易于使用的界面,可以调整到特定的记录模式,放大器和参与者。由于自动设置,易于记录和易于使用的界面,参与者甚至可以自己开始和停止实验,从而有可能在没有研究人员在场的情况下提供数据。结论我们开发了一种新的录音平台,该平台与操作系统无关,用户友好,功能强大。我们为研究人员提供了一种解决方案,可以大大增加花费在记录上的时间,而不是设置(可能存在错误)。
The Easy and Versatile Neural Recording Platform (T-REX): Design and Development Study
Background Recording time in invasive neuroscientific research is limited and must be used as efficiently as possible. Time is often lost due to a long setup time and errors by the researcher, driven by the number of manually performed steps. Currently, recording solutions that automate experimental overhead are either custom-made by researchers or provided as a submodule in comprehensive neuroscientific toolboxes, and there are no platforms focused explicitly on recording. Objective Minimizing the number of manual actions may reduce error rates and experimental overhead. However, automation should avoid reducing the flexibility of the system. Therefore, we developed a software package named T-REX (Standalone Recorder of Experiments) that specifically simplifies the recording of experiments while focusing on retaining flexibility. Methods The proposed solution is a standalone webpage that the researcher can provide without an active internet connection. It is built using Bootstrap5 for the frontend and the Python package Flask for the backend. Only Python 3.7+ and a few dependencies are required to start the different experiments. Data synchronization is implemented using Lab Streaming Layer, an open-source networked synchronization ecosystem, enabling all major programming languages and toolboxes to be used for developing and executing the experiments. Additionally, T-REX runs on Windows, Linux, and macOS. Results The system reduces experimental overhead during recordings to a minimum. Multiple experiments are centralized in a simple local web interface that reduces an experiment’s setup, start, and stop to a single button press. In principle, any type of experiment, regardless of the scientific field (eg, behavioral or cognitive sciences, and electrophysiology), can be executed with the platform. T-REX includes an easy-to-use interface that can be adjusted to specific recording modalities, amplifiers, and participants. Because of the automated setup, easy recording, and easy-to-use interface, participants may even start and stop experiments by themselves, thus potentially providing data without the researcher’s presence. Conclusions We developed a new recording platform that is operating system independent, user friendly, and robust. We provide researchers with a solution that can greatly increase the time spent on recording instead of setting up (with its possible errors).