[lt;i>]棘球玄参叶绿体全基因组</i>和<i>S的比较分析。kakudensis< / i>和& lt; i> S。cephalantha< / i>

IF 0.8 Q4 PLANT SCIENCES
Ogyeong SON, KyoungSu CHOI
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引用次数: 0

摘要

<i>玄幻属<螺旋藻科(Scrophulariaceae)在世界范围内有200-270种,是一个具有挑战性的分支,具有形态多样性和杂交性。& lt; i> S。kakudensis< / i>在形态上与密切相关的分类群<i>S相似。kakudensis< / i>var. <i>微叶</i>;驾驶员</i>和<i>cephalantha< / i>。因此,本研究的目的是对其叶绿体(cp)基因组进行测序。kakudensis< / i>使用下一代测序并与相关分类群进行比较。kakudensis</i>该基因全长152,355 bp,由一对25,485 bp的反向重复组成,将83,479 bp的大单拷贝(LSC)与17,909 bp的小单拷贝区分开。cp基因组包含78个蛋白质编码基因,30个trna和4个rrna。基于6个<i>玄蒿</i> 78个蛋白质编码基因的系统发育分析物种显示<i>S。kakudensis< / i>和& lt; i> S。cephalantha< / i>形成了100%的引导值。我们比较了<i>S的cp全基因组。kakudensis< / i>和& lt; i> S。cephalantha< / i>并鉴定出7个序列分化区:<i>matK/rps16、rps16/trnQ、trnS/trnG、rpoB/trnC、trnS/trnG、rpl32/trnL、</i>和& lt; i> ndhD / psaC< / i>。这些区域可能有助于确定<i>S之间的系统发育关系。kakudensis< / i>有关的物种。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The complete chloroplast genome of <i>Scrophularia kakudensis</i> and a comparative analysis of <i>S. kakudensis</i> and <i>S. cephalantha</i>
The genus Scrophularia L. (Scrophulariaceae) comprises 200–270 species worldwide and is a taxonomically challenging lineage, displaying morphological diversity and hybridization. S. kakudensis is morphologically similar to the closely related taxa S. kakudensis var. microphylla, S. pilosa, and S. cephalantha. Therefore, the purpose of this study was to sequence the chloroplast (cp) genome of S. kakudensis using next-generation sequencing and compare it to those of related taxa. The complete cp genome sequence of Scrophularia kakudensis was found to be 152,355 bp long, consisting of a pair of inverted repeats of 25,485 bp that separate a large single-copy (LSC) of 83,479 bp from small single-copy regions of 17,909 bp. The cp genome contained 78 protein-coding genes, 30 tRNAs, and four rRNAs. A phylogenetic analysis based on 78 protein-coding genes from six Scrophularia species showed S. kakudensis and S. cephalantha formed with 100% bootstrap values. We compared the complete cp genomes of S. kakudensis and S. cephalantha and identified seven sequence divergence regions: matK/rps16, rps16/trnQ, trnS/trnG, rpoB/trnC, trnS/trnG, rpl32/trnL, and ndhD/psaC. These regions may be useful for determining the phylogenetic relationships among S. kakudensis-related species.
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来源期刊
KOREAN JOURNAL OF PLANT TAXONOMY
KOREAN JOURNAL OF PLANT TAXONOMY Agricultural and Biological Sciences-Plant Science
CiteScore
1.50
自引率
40.00%
发文量
23
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