{"title":"以半胱氨酸为配体的金属(II)肟配合物的合成、DFT计算及其在体外和硅中的生物进化研究。","authors":"Fatma Karipcin, Ufuk Türkay Öztoprak, Bülent Dede, Selmihan Şahin, İsmail Özmen","doi":"10.1080/07391102.2023.2281638","DOIUrl":null,"url":null,"abstract":"<p><p>New complexes with the formula of [ML(Cys)(H<sub>2</sub>O)<sub>2</sub>] were obtained as a result of the reaction between the oxime ligand [HL: 4-(4-bromophenylaminoisonitrosoacetyl)biphenyl], cysteine (Cys), and the metal(II) salts (Mn, Ni, Co, Zn, Cu). The newly synthesized compounds were characterized using conventional techniques such as molar conductance, magnetic measurements, elemental analysis, infrared spectroscopy, and thermal analysis (TGA/DTA). Based on the conductivity measurements in DMF, it was determined that the complexes were non-electrolytes. The TGA/DTA analysis was performed to examine the thermal stability and degradation behavior of all samples, and results demonstrated that metal oxides or sulfides formed as a result of the decompositions. In conjunction with other data obtained, the elemental analysis confirmed the octahedral coordination of the complexes with deprotonated oxime (O, O-donor) and amino acid (N, S-donor) ligands and two coordinated waters. The compounds' optimized geometries, molecular electrostatic potential diagrams, and frontier molecular orbitals were computed at the DFT/B3LYP level using the 6-311 G(d,p) and LANL2DZ basis sets. The antibacterial and DNA cleavage activities of all synthesized compounds were also screened, and molecular docking simulations were performed. According to the results of molecular docking studies conducted with three different proteins, the best interaction was found to be between HL-1HNJ with a binding energy of -9.5 kcal/mol. The stability of the HL-1HNJ complex was also verified by a molecular dynamics simulation performed for 50 ns.Communicated by Ramaswamy H. 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The newly synthesized compounds were characterized using conventional techniques such as molar conductance, magnetic measurements, elemental analysis, infrared spectroscopy, and thermal analysis (TGA/DTA). Based on the conductivity measurements in DMF, it was determined that the complexes were non-electrolytes. The TGA/DTA analysis was performed to examine the thermal stability and degradation behavior of all samples, and results demonstrated that metal oxides or sulfides formed as a result of the decompositions. In conjunction with other data obtained, the elemental analysis confirmed the octahedral coordination of the complexes with deprotonated oxime (O, O-donor) and amino acid (N, S-donor) ligands and two coordinated waters. The compounds' optimized geometries, molecular electrostatic potential diagrams, and frontier molecular orbitals were computed at the DFT/B3LYP level using the 6-311 G(d,p) and LANL2DZ basis sets. 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引用次数: 0
摘要
肟配体[HL: 4-(4-溴苯基氨基异硝基乙酰基)联苯]、半胱氨酸(Cys)与金属(II)盐(Mn、Ni、Co、Zn、Cu)反应,得到了分子式为[ML(Cys)(H2O)2]的配合物。利用摩尔电导、磁测量、元素分析、红外光谱和热分析(TGA/DTA)等常规技术对新合成的化合物进行了表征。根据DMF的电导率测量,确定配合物是非电解质。TGA/DTA分析了所有样品的热稳定性和降解行为,结果表明,金属氧化物或硫化物是分解的结果。结合得到的其他数据,元素分析证实了配合物与去质子化肟(O, O给体)和氨基酸(N, s给体)配体和两个配位水的八面体配位。利用6-311 G(d,p)和LANL2DZ基集在DFT/B3LYP水平上计算了化合物的优化几何形状、分子静电势图和前沿分子轨道。对合成的化合物进行了抗菌和DNA裂解活性的筛选,并进行了分子对接模拟。通过与3种不同蛋白的分子对接研究,发现HL-1HNJ之间的相互作用最好,结合能为-9.5 kcal/mol。通过50 ns的分子动力学模拟验证了HL-1HNJ配合物的稳定性。由Ramaswamy H. Sarma传达。
Synthesis and DFT calculations of metal(II) oxime complexes bearing cysteine as coligand and investigation of their biological evolutions in vitro and in silico.
New complexes with the formula of [ML(Cys)(H2O)2] were obtained as a result of the reaction between the oxime ligand [HL: 4-(4-bromophenylaminoisonitrosoacetyl)biphenyl], cysteine (Cys), and the metal(II) salts (Mn, Ni, Co, Zn, Cu). The newly synthesized compounds were characterized using conventional techniques such as molar conductance, magnetic measurements, elemental analysis, infrared spectroscopy, and thermal analysis (TGA/DTA). Based on the conductivity measurements in DMF, it was determined that the complexes were non-electrolytes. The TGA/DTA analysis was performed to examine the thermal stability and degradation behavior of all samples, and results demonstrated that metal oxides or sulfides formed as a result of the decompositions. In conjunction with other data obtained, the elemental analysis confirmed the octahedral coordination of the complexes with deprotonated oxime (O, O-donor) and amino acid (N, S-donor) ligands and two coordinated waters. The compounds' optimized geometries, molecular electrostatic potential diagrams, and frontier molecular orbitals were computed at the DFT/B3LYP level using the 6-311 G(d,p) and LANL2DZ basis sets. The antibacterial and DNA cleavage activities of all synthesized compounds were also screened, and molecular docking simulations were performed. According to the results of molecular docking studies conducted with three different proteins, the best interaction was found to be between HL-1HNJ with a binding energy of -9.5 kcal/mol. The stability of the HL-1HNJ complex was also verified by a molecular dynamics simulation performed for 50 ns.Communicated by Ramaswamy H. Sarma.
期刊介绍:
The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.