De Cai, Xianhe Sun, Niyun Zhou, Xiao Han, Jianhua Yao
{"title":"RCNN在乳腺癌组织学图像中有效检测有丝分裂","authors":"De Cai, Xianhe Sun, Niyun Zhou, Xiao Han, Jianhua Yao","doi":"10.1109/ISBI.2019.8759461","DOIUrl":null,"url":null,"abstract":"Mitotic cell detection and counting per tissue area is an important aggressiveness indicator for the invasive breast cancer. However, manual mitosis counting by pathologists is extremely labor-intensive. Several automatic mitosis detection methods have been proposed in recent years. Traditional methods using hand-crafted features suffer from large mitotic cell shape variation and the existence of many mimics with similar appearance. Pixel-wise classification working in a sliding window manner is time-consuming which hinders it from clinical application. In this work, we propose an efficient mitosis detection method in breast cancer histology images by applying modified regional convolutional neural network (RCNN). Our method achieves 0.76 in precision, 0.72 recall and 0.736 F1 score on MICCAI TUPAC 2016 datasets, outperforming all the previously published results as far as we know. F1 score of 0.585 is also achieved on ICPR 2014 mitosis dataset. TUPAC 2016 and ICPR 2014 datasets are cross validated without and with color normalization to study the generalization performance. The inference time for a 2000×2000 image is ~ 0.8 s, making our method a promising tool for clinical deployment.","PeriodicalId":119935,"journal":{"name":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","volume":"6 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2019-04-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"30","resultStr":"{\"title\":\"Efficient Mitosis Detection in Breast Cancer Histology Images by RCNN\",\"authors\":\"De Cai, Xianhe Sun, Niyun Zhou, Xiao Han, Jianhua Yao\",\"doi\":\"10.1109/ISBI.2019.8759461\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Mitotic cell detection and counting per tissue area is an important aggressiveness indicator for the invasive breast cancer. However, manual mitosis counting by pathologists is extremely labor-intensive. Several automatic mitosis detection methods have been proposed in recent years. Traditional methods using hand-crafted features suffer from large mitotic cell shape variation and the existence of many mimics with similar appearance. Pixel-wise classification working in a sliding window manner is time-consuming which hinders it from clinical application. In this work, we propose an efficient mitosis detection method in breast cancer histology images by applying modified regional convolutional neural network (RCNN). Our method achieves 0.76 in precision, 0.72 recall and 0.736 F1 score on MICCAI TUPAC 2016 datasets, outperforming all the previously published results as far as we know. F1 score of 0.585 is also achieved on ICPR 2014 mitosis dataset. TUPAC 2016 and ICPR 2014 datasets are cross validated without and with color normalization to study the generalization performance. The inference time for a 2000×2000 image is ~ 0.8 s, making our method a promising tool for clinical deployment.\",\"PeriodicalId\":119935,\"journal\":{\"name\":\"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)\",\"volume\":\"6 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2019-04-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"30\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ISBI.2019.8759461\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2019 IEEE 16th International Symposium on Biomedical Imaging (ISBI 2019)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ISBI.2019.8759461","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 30
摘要
每组织面积有丝分裂细胞的检测和计数是判断浸润性乳腺癌侵袭性的重要指标。然而,病理学家手工有丝分裂计数是非常劳动密集型的。近年来提出了几种自动检测有丝分裂的方法。使用手工特征的传统方法存在有丝分裂细胞形状差异大和存在许多具有相似外观的模仿者的问题。以滑动窗口方式进行逐像素分类耗时长,阻碍了其临床应用。在这项工作中,我们提出了一种基于改进的区域卷积神经网络(RCNN)的乳腺癌组织学图像有丝分裂检测方法。我们的方法在MICCAI TUPAC 2016数据集上的准确率为0.76,召回率为0.72,F1得分为0.736,优于我们所知的所有先前发表的结果。在ICPR 2014有丝分裂数据集上F1得分也达到0.585。分别对TUPAC 2016和ICPR 2014数据集进行了无颜色归一化和有颜色归一化的交叉验证,以研究泛化性能。对于2000×2000图像的推理时间为~ 0.8 s,使我们的方法成为临床部署的有前途的工具。
Efficient Mitosis Detection in Breast Cancer Histology Images by RCNN
Mitotic cell detection and counting per tissue area is an important aggressiveness indicator for the invasive breast cancer. However, manual mitosis counting by pathologists is extremely labor-intensive. Several automatic mitosis detection methods have been proposed in recent years. Traditional methods using hand-crafted features suffer from large mitotic cell shape variation and the existence of many mimics with similar appearance. Pixel-wise classification working in a sliding window manner is time-consuming which hinders it from clinical application. In this work, we propose an efficient mitosis detection method in breast cancer histology images by applying modified regional convolutional neural network (RCNN). Our method achieves 0.76 in precision, 0.72 recall and 0.736 F1 score on MICCAI TUPAC 2016 datasets, outperforming all the previously published results as far as we know. F1 score of 0.585 is also achieved on ICPR 2014 mitosis dataset. TUPAC 2016 and ICPR 2014 datasets are cross validated without and with color normalization to study the generalization performance. The inference time for a 2000×2000 image is ~ 0.8 s, making our method a promising tool for clinical deployment.