超高维数据下广义加性加速寿命模型的Buckley-James估计

Zichang Li, Xuejing Zhao
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引用次数: 0

摘要

寿命数据中的高维协变量是生存分析中的一个挑战,特别是在基因表达谱中。本文的目的是提出一种有效的算法,将广义加性模型扩展到具有高维协变量的生存数据。该算法将广义可加性(GAM)模型与Buckley-James估计相结合,对非线性模型进行非参数扩展,利用GAM来说明协变量的非线性效应,利用Buckley-James估计来解决具有右截尾响应的回归模型。此外,我们使用最大信息系数(MIC)型变量筛选和加权p值来降低高维情况下的维数。在模拟数据集和两个真实生存数据集上,将该算法的性能与Cox比例风险回归模型、随机生存森林和BJ - AFT三种基准模型进行了比较。通过一致性指数(C‐index)和修正均方误差(mMSE)对结果进行评价,证明了该算法的优越性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Buckley–James estimation of generalized additive accelerated lifetime model with ultrahigh‐dimensional data
High‐dimensional covariates in lifetime data is a challenge in survival analysis, especially in gene expression profile. The objective of this paper is to propose an efficient algorithm to extend the generalized additive model to survival data with high‐dimensional covariates. The algorithm is combined of generalized additive (GAM) model and Buckley–James estimation, which makes a nonparametric extension to the nonlinear model, where the GAM is exploited to illustrate the nonlinear effect of the covariates and the Buckley–James estimation is used to address the regression model with right‐censored response. In addition, we use maximal‐information‐coefficient (MIC)‐type variable screening and weighted p‐value to reduce dimension in high‐dimensional situations. The performance of the proposed algorithm is compared with the three benchmark models: Cox proportional hazards regression model, random survival forest, and BJ‐AFT on a simulated dataset and two real survival datasets. The results, evaluated by concordance index (C‐index) as well as modified mean squared error (mMSE), illustrated the superiority of the proposed algorithm.
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