分析亚热带地区大豆自省基因多样性的分析

R. T. Terryana, Nickita Dewi Safina, S. Suryani, Kristianto Nugroho, Puji Lestari
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引用次数: 0

摘要

大豆种质资源遗传多样性信息将决定大豆育种计划的成功与否。利用种质资源信息网络(GRIN)、美国农业部(USDA)数据库(www.ars-grin.gov)和10个微卫星标记收集的4个定性形态性状信息,分析了45份亚热带引种大豆种质资源间的亲缘关系。引进大豆材料的形态特征有助于支持分子鉴定的结果。本研究选用的引种大豆材料在形态和分子性状上具有多样性。主成分分析表明,花色、荚果花色和生长习性对总遗传多样性贡献最大。在主坐标分析的基础上,将所有引入的信息重叠到四个象限中。微卫星引物在总加入数上均表现出多态性。等位基因变异较高(9 ~ 27个等位基因),平均等位基因数和多态信息含量(PIC)分别为20.7和0.95(0.92 ~ 0.97)。所有微卫星标记的PIC值均>0.7,表明这些标记适合于高分化的大豆多样性研究,遗传多样性平均值为0.95。系统发育分析表明,45份大豆材料可分为两大类群。属于同一区域的大豆材料并不总是占据同一类群。结果表明,形态学和分子遗传多样性相结合的方法可以有效地评价任何育种计划中不同大豆材料的变异。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
ANALISIS KERAGAMAN GENETIK AKSESI KEDELAI INTRODUKSI DARI WILAYAH SUBTROPIS BERBASIS MORFOLOGI DAN MOLEKULER
Genetic diversity information on soybean germplasm will establish the success of soybean breeding program. In the present study, four qualitative morphological traits information collected from Germplasm Resources Information Network (GRIN), United States Department of Agriculture (USDA) database (www.ars-grin.gov) and 10 microsatellite markers were used to analyze the relationship among 45 accessions of subtropical introduced soybean. The morphological characters of introduced soybean accessions contributed to support the result of molecular characterization. The introduced soybean accessions used in this study were diverse based on morphological and molecular characters. Based on principle component analysis, the flower color, pod color, and growth habit contributed most of the total genetic diversity. All introduced accessions were overlap into four quadrants based on principal coordinate analysis. All microsatellite primers showed polymorphism on total accession observed. High allele variation (9–27 alleles) was observed among tested accessions, with an average allele number and Polymorphic Information Content (PIC) value of 20.7 and 0.95 (0.92–0.97), respectively. All microsatellite markers showed PIC value >0.7 indicating that these markers were suitable for soybean diversity studies with high differentiation and with the average value of genetic diversity of 0.95. The phylogenetic analysis revealed that 45 soybean accessions could be divided into two major groups. Soybean accessions belonging to the same area did not always occupy the same group. The results confirmed that both morphology and molecular genetic diversity in a combined way could efficiently evaluate the variation present in different soybean accessions in any breeding program.
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