现场演示:通过自主数据采集和强大的数据管理,提高生物医学研究的精度、生产力和可重复性

Yousef Gtat, A. Mason
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引用次数: 1

摘要

我们介绍了eGor数字实验室助理平台,该平台改善了表征材料,设备和工艺的体验。eGor是一个高度灵活的平台,旨在解决生物传感器和生物医学系统开发中的挑战,用于1)具有精确定时控制的数据采集自动化,2)产生具有丰富信息的结果对象,定义测量设置和仪器和数据集的来源,以及3)在整个数据生命周期中对结果对象和处理过的子数据集进行管理。eGor将三个工具打包到用户友好的浏览器界面中:设计器管理仪器的数字库存和数字捕获测量项目方案细节,包括仪器布局和测试程序;监控实时测量,搜索和运行项目方案,并计划未来的自动化项目运行;分析器搜索,查看和注释结果对象,其中包含项目方案的数字描述及其生成的结果数据,过滤和处理数据集,并跟踪所有仪器,方案和数据集的来源。这些eGor服务通过运行在本地工作台上的Instrument Manager工具与测量工作台进行接口,以收集来自物理仪器的数据并管理与物理仪器的通信。总之,这些eGor工具通过定时控制的自动化提高了生物医学研究的准确性和精度,并通过直观的用户友好界面提高了生产力,这些界面能够在没有用户在场的情况下调度和运行测量。此外,eGor可以通过生成元丰富的结果对象,允许精确重复测量和协作共享数据和详细的项目方案,从而对研究的可重复性产生开创性的影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Live demonstration: Enhancing biomedical research precision, productivity and reproducibility via autonomous data acquisition and robust data curation
We present the eGor digital laboratory assistant platform that improves the experience of characterizing materials, devices and processes. Conceived to address challenges in biosensor and biomedical system development, eGor is a highly flexible platform for 1) automation of data acquisition with precise timing control, 2) production of results objects that are rich with information defining the measurement setup and provenance of instruments and datasets, and 3) curation of results objects and processed child datasets throughout the data life cycle. eGor packs three tools into a user-friendly browser interface: Designer to manage digital inventory of instruments and digitally capture measurement project scheme details including instrument layout and test procedures; Executer to monitor real-time measurements, search and run project schemes, and schedule future automated project runs; Analyzer to search, view and annotate results objects containing a digital description of the project scheme and the results data it generated, filter and process datasets, and trace provenance across all instruments, schemes, and datasets. These eGor services interface with a measurement workbench through the Instrument Manager tool that runs on local workbenches to collection data from and manage communication with physical instruments. Together, these eGor tools enable biomedical research with improved accuracy and precision through timing-controlled automation and with greater productivity through intuitive user-friendly interfaces capable of scheduling and running measurements without user presence. Moreover, eGor can have groundbreaking impact on research reproducibility by generating meta-rich results objects that permit exact repetition of measurements and collaborative sharing of both data and detailed project schemes.
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