{"title":"基于Neo4j的中医脾胃疾病知识图谱构建","authors":"Can Li, Feng Lin, Dan Xie","doi":"10.1145/3570773.3570865","DOIUrl":null,"url":null,"abstract":"Traditional Chinese Medicine (TCM) has a lot of valuable experience in the treatment of spleen and stomach diseases. Over the years, a large number of clinical resources have been accumulated in electronic medical records (EMR), and researchers have also published many related research papers. In order to make better use of these data resources, this paper introduces a process and method to build a knowledge graph of spleen and stomach diseases in TCM, and takes the EMR of TCM for spleen and stomach diseases and related literature inscriptions as data sources, and selects four commonly used named entity recognition (NER) models for comparative experiments of NER. Then relation extraction is executed. Finally, the neo4j graphical database is used to realize the construction and visualization of the knowledge graph of the spleen and stomach diseases of TCM. The experimental results showed that the BERT-BiLSTM-CRF model is the best in extracting entities, extracting symptoms, Chinese and Western medical diagnoses, and other medical entities with an average F1 value of 88.31%, and extracting relationships between medical entities using the BiGRU-Attention model with an Acc value of 88.26%. The knowledge graph of spleen and stomach diseases constructed can be retrieved under neo4j from a number of diseases, symptoms, and others. The knowledge graph of spleen and stomach diseases can be retrieved from multiple perspectives, such as disease and symptoms under neo4j. The knowledge graph constructed in this paper will help to deeply explore the potential knowledge and intrinsic relationships in the clinical treatment data resources of spleen and stomach diseases of TCM, help to better inherit the experience, and improve the clinical level of TCM.","PeriodicalId":153475,"journal":{"name":"Proceedings of the 3rd International Symposium on Artificial Intelligence for Medicine Sciences","volume":"34 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2022-10-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Construction of Knowledge Graph of Spleen and Stomach Diseases in Traditional Chinese Medicine Based on Neo4j\",\"authors\":\"Can Li, Feng Lin, Dan Xie\",\"doi\":\"10.1145/3570773.3570865\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Traditional Chinese Medicine (TCM) has a lot of valuable experience in the treatment of spleen and stomach diseases. Over the years, a large number of clinical resources have been accumulated in electronic medical records (EMR), and researchers have also published many related research papers. In order to make better use of these data resources, this paper introduces a process and method to build a knowledge graph of spleen and stomach diseases in TCM, and takes the EMR of TCM for spleen and stomach diseases and related literature inscriptions as data sources, and selects four commonly used named entity recognition (NER) models for comparative experiments of NER. Then relation extraction is executed. Finally, the neo4j graphical database is used to realize the construction and visualization of the knowledge graph of the spleen and stomach diseases of TCM. The experimental results showed that the BERT-BiLSTM-CRF model is the best in extracting entities, extracting symptoms, Chinese and Western medical diagnoses, and other medical entities with an average F1 value of 88.31%, and extracting relationships between medical entities using the BiGRU-Attention model with an Acc value of 88.26%. The knowledge graph of spleen and stomach diseases constructed can be retrieved under neo4j from a number of diseases, symptoms, and others. The knowledge graph of spleen and stomach diseases can be retrieved from multiple perspectives, such as disease and symptoms under neo4j. The knowledge graph constructed in this paper will help to deeply explore the potential knowledge and intrinsic relationships in the clinical treatment data resources of spleen and stomach diseases of TCM, help to better inherit the experience, and improve the clinical level of TCM.\",\"PeriodicalId\":153475,\"journal\":{\"name\":\"Proceedings of the 3rd International Symposium on Artificial Intelligence for Medicine Sciences\",\"volume\":\"34 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2022-10-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Proceedings of the 3rd International Symposium on Artificial Intelligence for Medicine Sciences\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1145/3570773.3570865\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proceedings of the 3rd International Symposium on Artificial Intelligence for Medicine Sciences","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1145/3570773.3570865","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0
摘要
中医在脾胃疾病的治疗上有许多宝贵的经验。多年来,电子病历(electronic medical records, EMR)积累了大量的临床资源,研究者也发表了许多相关的研究论文。为了更好地利用这些数据资源,本文介绍了构建中医脾胃疾病知识图谱的流程和方法,并以中医脾胃疾病的EMR和相关文献铭文为数据源,选取了四种常用的命名实体识别(NER)模型进行NER对比实验。然后执行关系提取。最后,利用neo4j图形数据库实现中医脾胃病知识图谱的构建和可视化。实验结果表明,BERT-BiLSTM-CRF模型在提取实体、提取症状、中西医学诊断和其他医学实体方面效果最好,平均F1值为88.31%,使用BiGRU-Attention模型提取医学实体之间关系的Acc值为88.26%。在neo4j下,可以从许多疾病、症状和其他疾病中检索构建的脾胃疾病知识图谱。脾胃疾病的知识图谱可以从多个角度检索,例如neo4j下的疾病和症状。本文构建的知识图谱有助于深入挖掘中医脾胃病临床治疗数据资源中的潜在知识和内在关系,有助于更好地传承经验,提高中医临床水平。
Construction of Knowledge Graph of Spleen and Stomach Diseases in Traditional Chinese Medicine Based on Neo4j
Traditional Chinese Medicine (TCM) has a lot of valuable experience in the treatment of spleen and stomach diseases. Over the years, a large number of clinical resources have been accumulated in electronic medical records (EMR), and researchers have also published many related research papers. In order to make better use of these data resources, this paper introduces a process and method to build a knowledge graph of spleen and stomach diseases in TCM, and takes the EMR of TCM for spleen and stomach diseases and related literature inscriptions as data sources, and selects four commonly used named entity recognition (NER) models for comparative experiments of NER. Then relation extraction is executed. Finally, the neo4j graphical database is used to realize the construction and visualization of the knowledge graph of the spleen and stomach diseases of TCM. The experimental results showed that the BERT-BiLSTM-CRF model is the best in extracting entities, extracting symptoms, Chinese and Western medical diagnoses, and other medical entities with an average F1 value of 88.31%, and extracting relationships between medical entities using the BiGRU-Attention model with an Acc value of 88.26%. The knowledge graph of spleen and stomach diseases constructed can be retrieved under neo4j from a number of diseases, symptoms, and others. The knowledge graph of spleen and stomach diseases can be retrieved from multiple perspectives, such as disease and symptoms under neo4j. The knowledge graph constructed in this paper will help to deeply explore the potential knowledge and intrinsic relationships in the clinical treatment data resources of spleen and stomach diseases of TCM, help to better inherit the experience, and improve the clinical level of TCM.