在系统发育关系存储库中比较树

Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001) Pub Date : 2001-03-04 DOI:10.1109/BIBE.2001.974426

John Bluis, Ravi Nori, Hsin-Wei Wang, Pinglei Zhou, J. Gogarten, Dong-Guk Shin

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引用次数: 1

摘要

科学家们能够使用许多不同的系统发育分析工具来协助他们的研究。数据收集和数据分析过程可能需要几天或几周才能完成。在存储库中提供这些数据将减少这个过程的时间，并允许研究人员花更多的时间来分析数据，而不是收集数据。我们收集了21个完全测序的基因组数据，并创建了一个直观的基因组浏览界面。该界面允许用户搜索这些数据，包括存储在数据库中的预先计算的系统发育树。我们还开发了一种新的方法来比较大量的系统发育树，这样用户就可以根据用户给定的假设树来搜索数据库。

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Comparing trees in a phylogenetic relationship repository

Scientists are able to use many different phylogenetic analysis tools to assist them in their research. The data collection and data analysis processes can take days or weeks to complete. Having this data available in a repository would reduce this process time and allow researchers to spend more time analyzing data instead of collecting it. We collected data for 21 completely sequenced genomes and created an intuitive interface for browsing the genomes. The interface allows users to search this data including the pre-calculated phylogenetic trees that are stored in the database. We have also developed a new method for comparing a large set of phylogenetic trees so users can search the database based on a user given hypothesis tree.

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Proceedings 2nd Annual IEEE International Symposium on Bioinformatics and Bioengineering (BIBE 2001)

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