Navid Hasanzadeh, Saman Sotoudeh Paima, Ali Bashirgonbadi, M. Naghibi, H. Soltanian-Zadeh
{"title":"新型冠状病毒感染CT分割:四种基于unet的网络的比较","authors":"Navid Hasanzadeh, Saman Sotoudeh Paima, Ali Bashirgonbadi, M. Naghibi, H. Soltanian-Zadeh","doi":"10.1109/ICBME51989.2020.9319412","DOIUrl":null,"url":null,"abstract":"Diagnosis and staging of COVID-19 are crucial for optimal management of the disease. To this end, novel image analysis methods need to be developed to assist radiologists with the detection and quantification of the COVID-19-related lung infections. In this work, we develop and evaluate four Artificial intelligence (AI) based lesion segmentation and quantification methods from chest CT, using U-Net, Attention U-Net, R2U-Net, and Attention R2U-Net models. These models are trained and evaluated using a dataset consisting of 8739 CT images of the lungs from 147 healthy subjects and 150 patients infected by COVID-19. The results show that the Attention R2U-Net model is superior to the others with a Dice value of 0.79. The lesion volumes estimated by the Attention R2U-Net model are highly correlated with those of the manual segmentations by an expert, with a correlation coefficient of 0.96.","PeriodicalId":120969,"journal":{"name":"2020 27th National and 5th International Iranian Conference on Biomedical Engineering (ICBME)","volume":"35 5 1","pages":"0"},"PeriodicalIF":0.0000,"publicationDate":"2020-11-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"7","resultStr":"{\"title\":\"Segmentation of COVID-19 Infections on CT: Comparison of Four UNet-Based Networks\",\"authors\":\"Navid Hasanzadeh, Saman Sotoudeh Paima, Ali Bashirgonbadi, M. Naghibi, H. Soltanian-Zadeh\",\"doi\":\"10.1109/ICBME51989.2020.9319412\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Diagnosis and staging of COVID-19 are crucial for optimal management of the disease. To this end, novel image analysis methods need to be developed to assist radiologists with the detection and quantification of the COVID-19-related lung infections. In this work, we develop and evaluate four Artificial intelligence (AI) based lesion segmentation and quantification methods from chest CT, using U-Net, Attention U-Net, R2U-Net, and Attention R2U-Net models. These models are trained and evaluated using a dataset consisting of 8739 CT images of the lungs from 147 healthy subjects and 150 patients infected by COVID-19. The results show that the Attention R2U-Net model is superior to the others with a Dice value of 0.79. The lesion volumes estimated by the Attention R2U-Net model are highly correlated with those of the manual segmentations by an expert, with a correlation coefficient of 0.96.\",\"PeriodicalId\":120969,\"journal\":{\"name\":\"2020 27th National and 5th International Iranian Conference on Biomedical Engineering (ICBME)\",\"volume\":\"35 5 1\",\"pages\":\"0\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2020-11-26\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"7\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"2020 27th National and 5th International Iranian Conference on Biomedical Engineering (ICBME)\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1109/ICBME51989.2020.9319412\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"2020 27th National and 5th International Iranian Conference on Biomedical Engineering (ICBME)","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1109/ICBME51989.2020.9319412","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Segmentation of COVID-19 Infections on CT: Comparison of Four UNet-Based Networks
Diagnosis and staging of COVID-19 are crucial for optimal management of the disease. To this end, novel image analysis methods need to be developed to assist radiologists with the detection and quantification of the COVID-19-related lung infections. In this work, we develop and evaluate four Artificial intelligence (AI) based lesion segmentation and quantification methods from chest CT, using U-Net, Attention U-Net, R2U-Net, and Attention R2U-Net models. These models are trained and evaluated using a dataset consisting of 8739 CT images of the lungs from 147 healthy subjects and 150 patients infected by COVID-19. The results show that the Attention R2U-Net model is superior to the others with a Dice value of 0.79. The lesion volumes estimated by the Attention R2U-Net model are highly correlated with those of the manual segmentations by an expert, with a correlation coefficient of 0.96.