Magebuilder:一个模式转换工具，用于从表格微阵列数据生成MAGE-ML

Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003 Pub Date : 2003-08-11 DOI:10.1109/CSB.2003.1227359

Bill Martin, R. Horton

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引用次数: 4

摘要

Magebuilder对象接受一组Magemap对象和一组数据流作为输入，并产生MAGEstk对象表示，然后将其序列化为MAGE-ML。Magemap对象封装了来自输入流的数据记录如何与一个MAGE对象相关的规则。每个输入“流”是一个匿名子例程，它提供记录，其字段表示输入表中的列。输入表可以是带分隔符的文本文件、数据库查询，或者本质上可以强制转换为一组具有固定字段的记录的任何源。

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Magebuilder: a schema translation tool for generating MAGE-ML from tabular microarray data

A 'Magebuilder' object takes a set of 'Magemap' objects and a set of data streams as input, and produces a MAGEstk object representation, which is then serialized as MAGE-ML. A 'Magemap' object encapsulates the rules of how data records from an input stream relate to one MAGE object. Each input 'stream' is an anonymous subroutine that supplies records whose fields represent columns in the input table. The input tables can be delimited text files, database queries, or essentially any source that can be coerced into a set of records with fixed fields.

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Computational Systems Bioinformatics. CSB2003. Proceedings of the 2003 IEEE Bioinformatics Conference. CSB2003

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